1lf6: Difference between revisions
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|PDB= 1lf6 |SIZE=350|CAPTION= <scene name='initialview01'>1lf6</scene>, resolution 2.10Å | |PDB= 1lf6 |SIZE=350|CAPTION= <scene name='initialview01'>1lf6</scene>, resolution 2.10Å | ||
|SITE= | |SITE= | ||
|LIGAND= <scene name='pdbligand=SO4:SULFATE ION'>SO4</scene> | |LIGAND= <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene> | ||
|ACTIVITY= [http://en.wikipedia.org/wiki/Glucan_1,4-alpha-glucosidase Glucan 1,4-alpha-glucosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.3 3.2.1.3] | |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucan_1,4-alpha-glucosidase Glucan 1,4-alpha-glucosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.3 3.2.1.3] </span> | ||
|GENE= | |GENE= | ||
|DOMAIN= | |||
|RELATEDENTRY=[[1ayx|1AYX]], [[3gly|3GLY]], [[1lf9|1LF9]] | |||
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1lf6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1lf6 OCA], [http://www.ebi.ac.uk/pdbsum/1lf6 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1lf6 RCSB]</span> | |||
}} | }} | ||
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[[Category: Honzatko, R B.]] | [[Category: Honzatko, R B.]] | ||
[[Category: Reilly, P J.]] | [[Category: Reilly, P J.]] | ||
[[Category: (alpha/alpha) barrel]] | [[Category: (alpha/alpha) barrel]] | ||
[[Category: 6 alpha-helical hairpin torroid]] | [[Category: 6 alpha-helical hairpin torroid]] | ||
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[[Category: super beta sandwich]] | [[Category: super beta sandwich]] | ||
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 22:02:03 2008'' | ||
Revision as of 22:02, 30 March 2008
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| , resolution 2.10Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | |||||||
| Activity: | Glucan 1,4-alpha-glucosidase, with EC number 3.2.1.3 | ||||||
| Related: | 1AYX, 3GLY, 1LF9
| ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
CRYSTAL STRUCTURE OF BACTERIAL GLUCOAMYLASE
OverviewOverview
The first crystal structures of a two-domain, prokaryotic glucoamylase were determined to high resolution from the clostridial species Thermoanaerobacterium thermosaccharolyticum with and without acarbose. The N-terminal domain has 18 antiparallel strands arranged in beta-sheets of a super-beta-sandwich. The C-terminal domain is an (alpha/alpha)(6) barrel, lacking the peripheral subdomain of eukaryotic glucoamylases. Interdomain contacts are common to all prokaryotic Family GH15 proteins. Domains similar to those of prokaryotic glucoamylases in maltose phosphorylases (Family GH65) and glycoaminoglycan lyases (Family PL8) suggest evolution from a common ancestor. Eukaryotic glucoamylases may have evolved from prokaryotic glucoamylases by the substitution of the N-terminal domain with the peripheral subdomain and by the addition of a starch-binding domain.
About this StructureAbout this Structure
1LF6 is a Single protein structure of sequence from Thermoanaerobacterium thermosaccharolyticum. Full crystallographic information is available from OCA.
ReferenceReference
Crystal structure and evolution of a prokaryotic glucoamylase., Aleshin AE, Feng PH, Honzatko RB, Reilly PJ, J Mol Biol. 2003 Mar 14;327(1):61-73. PMID:12614608
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