3nuq: Difference between revisions
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==Structure of a putative nucleotide phosphatase from Saccharomyces cerevisiae== | ==Structure of a putative nucleotide phosphatase from Saccharomyces cerevisiae== | ||
<StructureSection load='3nuq' size='340' side='right' caption='[[3nuq]], [[Resolution|resolution]] 1.70Å' scene=''> | <StructureSection load='3nuq' size='340' side='right' caption='[[3nuq]], [[Resolution|resolution]] 1.70Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[3nuq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/ | <table><tr><td colspan='2'>[[3nuq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Baker's_yeast Baker's yeast]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NUQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3NUQ FirstGlance]. <br> | ||
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr> | ||
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SDT1, SSM1, YGL224C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id= | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SDT1, SSM1, YGL224C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=559292 Baker's yeast])</td></tr> | ||
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/5'-nucleotidase 5'-nucleotidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.5 3.1.3.5] </span></td></tr> | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/5'-nucleotidase 5'-nucleotidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.5 3.1.3.5] </span></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3nuq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3nuq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3nuq RCSB], [http://www.ebi.ac.uk/pdbsum/3nuq PDBsum]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3nuq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3nuq OCA], [http://pdbe.org/3nuq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3nuq RCSB], [http://www.ebi.ac.uk/pdbsum/3nuq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3nuq ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | |||
[[http://www.uniprot.org/uniprot/SDT1_YEAST SDT1_YEAST]] Could be an enzyme that inactivates 6-azauracil by modifying it. | |||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
| Line 16: | Line 19: | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3nuq ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: 5'-nucleotidase]] | [[Category: 5'-nucleotidase]] | ||
[[Category: | [[Category: Baker's yeast]] | ||
[[Category: Brown, G]] | [[Category: Brown, G]] | ||
[[Category: Dong, A]] | [[Category: Dong, A]] | ||
Revision as of 22:34, 4 August 2016
Structure of a putative nucleotide phosphatase from Saccharomyces cerevisiaeStructure of a putative nucleotide phosphatase from Saccharomyces cerevisiae
Structural highlights
Function[SDT1_YEAST] Could be an enzyme that inactivates 6-azauracil by modifying it. Evolutionary Conservation Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf. |
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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)
OCACategories:
- 5'-nucleotidase
- Baker's yeast
- Brown, G
- Dong, A
- Edwards, A M
- Evdokimova, E
- Joachimiak, A
- Kudritsdka, M
- Structural genomic
- Savchenko, A
- Singer, A U
- Yakunin, A F
- Yang, C
- Alpha-beta hydrolase
- Hydrolase
- Mcsg
- Metal dependent
- PSI, Protein structure initiative
- Pyrimidine nucleotidase
- Resistance to pyrimidine derivative
- Suppresses the 6-au sensitivity of transcription elongation factor s-ii