1kp4: Difference between revisions
No edit summary |
No edit summary |
||
| Line 4: | Line 4: | ||
|PDB= 1kp4 |SIZE=350|CAPTION= <scene name='initialview01'>1kp4</scene>, resolution 1.60Å | |PDB= 1kp4 |SIZE=350|CAPTION= <scene name='initialview01'>1kp4</scene>, resolution 1.60Å | ||
|SITE= | |SITE= | ||
|LIGAND= <scene name='pdbligand=CA:CALCIUM ION'>CA</scene> | |LIGAND= <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene> | ||
|ACTIVITY= [http://en.wikipedia.org/wiki/Phospholipase_A(2) Phospholipase A(2)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.4 3.1.1.4] | |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Phospholipase_A(2) Phospholipase A(2)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.4 3.1.1.4] </span> | ||
|GENE= | |GENE= | ||
|DOMAIN= | |||
|RELATEDENTRY=[[1faz|1FAZ]], [[1it4|1IT4]], [[1it5|1IT5]] | |||
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1kp4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kp4 OCA], [http://www.ebi.ac.uk/pdbsum/1kp4 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1kp4 RCSB]</span> | |||
}} | }} | ||
| Line 26: | Line 29: | ||
[[Category: Matoba, Y.]] | [[Category: Matoba, Y.]] | ||
[[Category: Sugiyama, M.]] | [[Category: Sugiyama, M.]] | ||
[[Category: calcium ion]] | [[Category: calcium ion]] | ||
[[Category: phospholipase a2]] | [[Category: phospholipase a2]] | ||
[[Category: prokaryote]] | [[Category: prokaryote]] | ||
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 21:51:36 2008'' | ||
Revision as of 21:51, 30 March 2008
| |||||||
| , resolution 1.60Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | |||||||
| Activity: | Phospholipase A(2), with EC number 3.1.1.4 | ||||||
| Related: | 1FAZ, 1IT4, 1IT5
| ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
CALCIUM-BOUND FORM OF PROKARYOTIC PHOSPHOLIPASE A2
OverviewOverview
In this study, the x-ray crystal structures of the calcium-free and calcium-bound forms of phospholipase A(2) (PLA(2)), produced extracellularly by Streptomyces violaceoruber, were determined by using the multiple isomorphous replacement and molecular replacement methods, respectively. The former and latter structures were refined to an R-factor of 18.8% at a 1.4-A resolution and an R-factor of 15.0% at a 1.6-A resolution, respectively. The overall structure of the prokaryotic PLA(2) exhibits a novel folding topology that demonstrates that it is completely distinct from those of eukaryotic PLA(2)s, which have been already determined by x-ray and NMR analyses. Furthermore, the coordination geometry of the calcium(II) ion apparently deviated from that of eukaryotic PLA(2)s. Regardless of the evolutionary divergence, the catalytic mechanism including the calcium(II) ion on secreted PLA(2) seems to be conserved between prokaryotic and eukaryotic cells. Demonstrating that the overall structure determined by x-ray analysis is almost the same as that determined by NMR analysis is useful to discuss the catalytic mechanism at the molecular level of the bacterial PLA(2).
About this StructureAbout this Structure
1KP4 is a Single protein structure of sequence from Streptomyces violaceoruber. Full crystallographic information is available from OCA.
ReferenceReference
The crystal structure of prokaryotic phospholipase A2., Matoba Y, Katsube Y, Sugiyama M, J Biol Chem. 2002 May 31;277(22):20059-69. Epub 2002 Mar 15. PMID:11897785
Page seeded by OCA on Sun Mar 30 21:51:36 2008