5hdl: Difference between revisions

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'''Unreleased structure'''


The entry 5hdl is ON HOLD  until Paper Publication
==Crystal structure of shaft pilin spaA from Lactobacillus rhamnosus GG - E269A mutant==
<StructureSection load='5hdl' size='340' side='right' caption='[[5hdl]], [[Resolution|resolution]] 2.39&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[5hdl]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HDL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5HDL FirstGlance]. <br>
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5f44|5f44]], [[5faa|5faa]], [[5fgs|5fgs]], [[5fgr|5fgr]], [[5fie|5fie]], [[5hbb|5hbb]], [[5hts|5hts]], [[5j4m|5j4m]]</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5hdl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hdl OCA], [http://pdbe.org/5hdl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5hdl RCSB], [http://www.ebi.ac.uk/pdbsum/5hdl PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5hdl ProSAT]</span></td></tr>
</table>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Thus far, all solved structures of pilin-proteins comprising sortase-assembled pili are from pathogenic genera and species. Here, we present the first crystal structure of a pilin subunit (SpaA) from a non-pathogen host (Lactobacillus rhamnosus GG). SpaA consists of two tandem CnaB-type domains, each with an isopeptide bond and E-box motif. Intriguingly, while the isopeptide bond in the N-terminal domain forms between lysine and asparagine, the one in the C-terminal domain atypically involves aspartate. We also solved crystal structures of mutant proteins where residues implicated in forming isopeptide bonds were replaced. Expectedly, the E-box-substituted E139A mutant lacks an isopeptide bond in the N-terminal domain. However, the C-terminal E269A substitution gave two structures; one of both domains with their isopeptide bonds present, and another of only the N-terminal domain, but with an unformed isopeptide bond and significant conformational changes. This latter crystal structure has never been observed for any other Gram-positive pilin. Notably, the C-terminal isopeptide bond still forms in D295N-substituted SpaA, irrespective of E269 being present or absent. Although E-box mutations affect SpaA proteolytic and thermal stability, a cumulative effect perturbing normal pilus polymerization was unobserved. A model showing the polymerized arrangement of SpaA within the SpaCBA pilus is proposed.


Authors: Chaurasia, P., Pratap, S., von Ossowski, I., Palva, A., Krishnan, V.
New insights about pilus formation in gut-adapted Lactobacillus rhamnosus GG from the crystal structure of the SpaA backbone-pilin subunit.,Chaurasia P, Pratap S, von Ossowski I, Palva A, Krishnan V Sci Rep. 2016 Jun 28;6:28664. doi: 10.1038/srep28664. PMID:27349405<ref>PMID:27349405</ref>


Description: Crystal structure of shaft pilin spaA from Lactobacillus rhamnosus GG -E269A mutant
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
[[Category: Unreleased Structures]]
</div>
[[Category: Pratap, S]]
<div class="pdbe-citations 5hdl" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Chaurasia, P]]
[[Category: Krishnan, V]]
[[Category: Krishnan, V]]
[[Category: Von Ossowski, I]]
[[Category: Ossowski, I von]]
[[Category: Chaurasia, P]]
[[Category: Palva, A]]
[[Category: Palva, A]]
[[Category: Pratap, S]]
[[Category: Adhesin]]
[[Category: Cell adhesion]]
[[Category: Isopeptide]]
[[Category: Pilin]]
[[Category: Probiotic]]
[[Category: Spaa]]
[[Category: Spacba pili]]

Revision as of 18:10, 26 July 2016

Crystal structure of shaft pilin spaA from Lactobacillus rhamnosus GG - E269A mutantCrystal structure of shaft pilin spaA from Lactobacillus rhamnosus GG - E269A mutant

Structural highlights

5hdl is a 3 chain structure. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Publication Abstract from PubMed

Thus far, all solved structures of pilin-proteins comprising sortase-assembled pili are from pathogenic genera and species. Here, we present the first crystal structure of a pilin subunit (SpaA) from a non-pathogen host (Lactobacillus rhamnosus GG). SpaA consists of two tandem CnaB-type domains, each with an isopeptide bond and E-box motif. Intriguingly, while the isopeptide bond in the N-terminal domain forms between lysine and asparagine, the one in the C-terminal domain atypically involves aspartate. We also solved crystal structures of mutant proteins where residues implicated in forming isopeptide bonds were replaced. Expectedly, the E-box-substituted E139A mutant lacks an isopeptide bond in the N-terminal domain. However, the C-terminal E269A substitution gave two structures; one of both domains with their isopeptide bonds present, and another of only the N-terminal domain, but with an unformed isopeptide bond and significant conformational changes. This latter crystal structure has never been observed for any other Gram-positive pilin. Notably, the C-terminal isopeptide bond still forms in D295N-substituted SpaA, irrespective of E269 being present or absent. Although E-box mutations affect SpaA proteolytic and thermal stability, a cumulative effect perturbing normal pilus polymerization was unobserved. A model showing the polymerized arrangement of SpaA within the SpaCBA pilus is proposed.

New insights about pilus formation in gut-adapted Lactobacillus rhamnosus GG from the crystal structure of the SpaA backbone-pilin subunit.,Chaurasia P, Pratap S, von Ossowski I, Palva A, Krishnan V Sci Rep. 2016 Jun 28;6:28664. doi: 10.1038/srep28664. PMID:27349405[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

  1. Chaurasia P, Pratap S, von Ossowski I, Palva A, Krishnan V. New insights about pilus formation in gut-adapted Lactobacillus rhamnosus GG from the crystal structure of the SpaA backbone-pilin subunit. Sci Rep. 2016 Jun 28;6:28664. doi: 10.1038/srep28664. PMID:27349405 doi:http://dx.doi.org/10.1038/srep28664

5hdl, resolution 2.39Å

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