Dicer: Difference between revisions
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==Dicer== | ==Dicer== | ||
<StructureSection load='4NH3' size='340' side='right' caption="Dicer' scene='4NH3_dimer/1'> | |||
Dicer is a type of [[Ribonuclease]] that processes potentially harmful double-stranded RNA (dsRNA) into microRNA and small-interfering RNA (siRNA) to be used in the process of RNA interference. Dicer is commonly utilized by cells in order to prevent the assimilation of viral DNA into the cells’ genome. The viral DNA is butchered into smaller segments that are each about 21 nucleotides long; the cut take places at the 5’ phosphate and the 3’ hydroxyl, and usually includes a 2 nucleotide overhang. There is a single processing center in HS Dicer implying that there are two catalytic sites which help form products with the 2 3' overhang. These newly formed segments attach themselves to single stranded mRNA which ultimately leads to mRNA degradation by the cell and translational suppression. The dicer enzyme in humans contains three domains: the <scene name='70/706244/Rnase_iii_1/1'>RNase III 1</scene>, <scene name='70/706244/Rnase_iii_2/1'>RNase III 2</scene>, and the <scene name='70/706244/Paz_domain/1'>Paz Domain</scene>.<ref>PMID: 16410517</ref> There are three classes of RNase III proteins which are divided into categories called Escherichia coli RNase III, <scene name='70/706244/Drosha/1'>Drosha</scene>, and Dicer which are given the numbers one, two, and three respectively. The Escherichia coli RNase III class has one domain while the Drosha and dicer have two domains each. There is no evidence of the first class of enzymes in mammals. | Dicer is a type of [[Ribonuclease]] that processes potentially harmful double-stranded RNA (dsRNA) into microRNA and small-interfering RNA (siRNA) to be used in the process of RNA interference. Dicer is commonly utilized by cells in order to prevent the assimilation of viral DNA into the cells’ genome. The viral DNA is butchered into smaller segments that are each about 21 nucleotides long; the cut take places at the 5’ phosphate and the 3’ hydroxyl, and usually includes a 2 nucleotide overhang. There is a single processing center in HS Dicer implying that there are two catalytic sites which help form products with the 2 3' overhang. These newly formed segments attach themselves to single stranded mRNA which ultimately leads to mRNA degradation by the cell and translational suppression. The dicer enzyme in humans contains three domains: the <scene name='70/706244/Rnase_iii_1/1'>RNase III 1</scene>, <scene name='70/706244/Rnase_iii_2/1'>RNase III 2</scene>, and the <scene name='70/706244/Paz_domain/1'>Paz Domain</scene>.<ref>PMID: 16410517</ref> There are three classes of RNase III proteins which are divided into categories called Escherichia coli RNase III, <scene name='70/706244/Drosha/1'>Drosha</scene>, and Dicer which are given the numbers one, two, and three respectively. The Escherichia coli RNase III class has one domain while the Drosha and dicer have two domains each. There is no evidence of the first class of enzymes in mammals. | ||
==Structure== | ==Structure== | ||
Human Dicer (hDicer) is a <scene name='70/706244/4nh3_dimer/1'>dimer</scene>. Each chain is a large multidomain enzyme whose C-terminal half includes a PAZ domain, a pair of tandem RNase III domains, and a double-stranded RNA-binding domain.<ref>PMID: 17920623</ref> There are four <scene name='70/706244/Mg_2eb1/1'>magnesium</scene> ions that bind to the hDicer RNase IIIb homodimer. There are oxygen ligands bonded to each Magnesium, which create an <scene name='70/706244/Mg_2eb1/3'>octahedral</scene> geometry on each Magnesium. The <scene name='70/706244/Mg_2eb1/5'>amino acids</scene> amino acids present on the oxygen ligands are Glutamic Acid and Aspartic Acid. | Human Dicer (hDicer) is a <scene name='70/706244/4nh3_dimer/1'>dimer</scene>. Each chain is a large multidomain enzyme whose C-terminal half includes a PAZ domain, a pair of tandem RNase III domains, and a double-stranded RNA-binding domain.<ref>PMID: 17920623</ref> There are four <scene name='70/706244/Mg_2eb1/1'>magnesium</scene> ions that bind to the hDicer RNase IIIb homodimer. There are oxygen ligands bonded to each Magnesium, which create an <scene name='70/706244/Mg_2eb1/3'>octahedral</scene> geometry on each Magnesium. The <scene name='70/706244/Mg_2eb1/5'>amino acids</scene> amino acids present on the oxygen ligands are Glutamic Acid and Aspartic Acid. | ||
</StructureSection> | |||
==Pathology== | ==Pathology== | ||
Revision as of 18:34, 23 May 2016
DicerDicer
Dicer is a type of Ribonuclease that processes potentially harmful double-stranded RNA (dsRNA) into microRNA and small-interfering RNA (siRNA) to be used in the process of RNA interference. Dicer is commonly utilized by cells in order to prevent the assimilation of viral DNA into the cells’ genome. The viral DNA is butchered into smaller segments that are each about 21 nucleotides long; the cut take places at the 5’ phosphate and the 3’ hydroxyl, and usually includes a 2 nucleotide overhang. There is a single processing center in HS Dicer implying that there are two catalytic sites which help form products with the 2 3' overhang. These newly formed segments attach themselves to single stranded mRNA which ultimately leads to mRNA degradation by the cell and translational suppression. The dicer enzyme in humans contains three domains: the , , and the .[1] There are three classes of RNase III proteins which are divided into categories called Escherichia coli RNase III, , and Dicer which are given the numbers one, two, and three respectively. The Escherichia coli RNase III class has one domain while the Drosha and dicer have two domains each. There is no evidence of the first class of enzymes in mammals.
StructureHuman Dicer (hDicer) is a . Each chain is a large multidomain enzyme whose C-terminal half includes a PAZ domain, a pair of tandem RNase III domains, and a double-stranded RNA-binding domain.[2] There are four ions that bind to the hDicer RNase IIIb homodimer. There are oxygen ligands bonded to each Magnesium, which create an geometry on each Magnesium. The amino acids present on the oxygen ligands are Glutamic Acid and Aspartic Acid.
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PathologyPathology
Mutations involving the dicer protein have been linked to the development of diseases in humans.
ReferencesReferences
- ↑ Macrae IJ, Zhou K, Li F, Repic A, Brooks AN, Cande WZ, Adams PD, Doudna JA. Structural basis for double-stranded RNA processing by Dicer. Science. 2006 Jan 13;311(5758):195-8. PMID:16410517 doi:311/5758/195
- ↑ Takeshita D, Zenno S, Lee WC, Nagata K, Saigo K, Tanokura M. Homodimeric structure and double-stranded RNA cleavage activity of the C-terminal RNase III domain of human dicer. J Mol Biol. 2007 Nov 16;374(1):106-20. Epub 2007 Sep 8. PMID:17920623 doi:10.1016/j.jmb.2007.08.069