1ii5: Difference between revisions
No edit summary |
No edit summary |
||
| Line 4: | Line 4: | ||
|PDB= 1ii5 |SIZE=350|CAPTION= <scene name='initialview01'>1ii5</scene>, resolution 1.60Å | |PDB= 1ii5 |SIZE=350|CAPTION= <scene name='initialview01'>1ii5</scene>, resolution 1.60Å | ||
|SITE= | |SITE= | ||
|LIGAND= <scene name='pdbligand=GLU:GLUTAMIC ACID'>GLU</scene> | |LIGAND= <scene name='pdbligand=GLU:GLUTAMIC+ACID'>GLU</scene> | ||
|ACTIVITY= | |ACTIVITY= | ||
|GENE= GluR0 slr1257 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1143 Synechocystis sp.]) | |GENE= GluR0 slr1257 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1143 Synechocystis sp.]) | ||
|DOMAIN= | |||
|RELATEDENTRY=[[1iit|1IIT]], [[1iiw|1IIW]] | |||
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ii5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ii5 OCA], [http://www.ebi.ac.uk/pdbsum/1ii5 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1ii5 RCSB]</span> | |||
}} | }} | ||
| Line 25: | Line 28: | ||
[[Category: Mayer, M L.]] | [[Category: Mayer, M L.]] | ||
[[Category: Olson, R.]] | [[Category: Olson, R.]] | ||
[[Category: membrane protein]] | [[Category: membrane protein]] | ||
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 21:20:06 2008'' | ||
Revision as of 21:20, 30 March 2008
| |||||||
| , resolution 1.60Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | |||||||
| Gene: | GluR0 slr1257 (Synechocystis sp.) | ||||||
| Related: | 1IIT, 1IIW
| ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
CRYSTAL STRUCTURE OF THE GLUR0 LIGAND BINDING CORE COMPLEX WITH L-GLUTAMATE
OverviewOverview
High-resolution structures of the ligand binding core of GluR0, a glutamate receptor ion channel from Synechocystis PCC 6803, have been solved by X-ray diffraction. The GluR0 structures reveal homology with bacterial periplasmic binding proteins and the rat GluR2 AMPA subtype neurotransmitter receptor. The ligand binding site is formed by a cleft between two globular alpha/beta domains. L-Glutamate binds in an extended conformation, similar to that observed for glutamine binding protein (GlnBP). However, the L-glutamate gamma-carboxyl group interacts exclusively with Asn51 in domain 1, different from the interactions of ligand with domain 2 residues observed for GluR2 and GlnBP. To address how neutral amino acids activate GluR0 gating we solved the structure of the binding site complex with L-serine. This revealed solvent molecules acting as surrogate ligand atoms, such that the serine OH group makes solvent-mediated hydrogen bonds with Asn51. The structure of a ligand-free, closed-cleft conformation revealed an extensive hydrogen bond network mediated by solvent molecules. Equilibrium centrifugation analysis revealed dimerization of the GluR0 ligand binding core with a dissociation constant of 0.8 microM. In the crystal, a symmetrical dimer involving residues in domain 1 occurs along a crystallographic 2-fold axis and suggests that tetrameric glutamate receptor ion channels are assembled from dimers of dimers. We propose that ligand-induced conformational changes cause the ion channel to open as a result of an increase in domain 2 separation relative to the dimer interface.
About this StructureAbout this Structure
1II5 is a Single protein structure of sequence from Synechocystis sp.. Full crystallographic information is available from OCA.
ReferenceReference
Mechanisms for ligand binding to GluR0 ion channels: crystal structures of the glutamate and serine complexes and a closed apo state., Mayer ML, Olson R, Gouaux E, J Mol Biol. 2001 Aug 24;311(4):815-36. PMID:11518533
Page seeded by OCA on Sun Mar 30 21:20:06 2008