4yjh: Difference between revisions

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'''Unreleased structure'''


The entry 4yjh is ON HOLD  until Paper Publication
==Crystal structure of DAAO(Y228L/R283G) variant (R-2-phenylpyrrolidine binding form)==
 
<StructureSection load='4yjh' size='340' side='right' caption='[[4yjh]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
Authors: Nakano, S., Yasukawa, K., Kawahara, N., Ishitsubo, E., Tokiwa, H., Asano, Y.
== Structural highlights ==
 
<table><tr><td colspan='2'>[[4yjh]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YJH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YJH FirstGlance]. <br>
Description: Crystal structure of DAAO(Y228L/R283G) variant (R-2-phenylpyrrolidine binding form)
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=96B:(2R)-2-PHENYLPYRROLIDINE'>96B</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
[[Category: Unreleased Structures]]
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4yjg|4yjg]], [[4yjf|4yjf]], [[4yjd|4yjd]]</td></tr>
[[Category: Yasukawa, K]]
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/D-amino-acid_oxidase D-amino-acid oxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.3.3 1.4.3.3] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4yjh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yjh OCA], [http://pdbe.org/4yjh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4yjh RCSB], [http://www.ebi.ac.uk/pdbsum/4yjh PDBsum]</span></td></tr>
</table>
== Function ==
[[http://www.uniprot.org/uniprot/OXDA_PIG OXDA_PIG]] Regulates the level of the neuromodulator D-serine in the brain. Has high activity towards D-DOPA and contributes to dopamine synthesis. Could act as a detoxifying agent which removes D-amino acids accumulated during aging. Acts on a variety of D-amino acids with a preference for those having small hydrophobic side chains followed by those bearing polar, aromatic, and basic groups. Does not act on acidic amino acids.
__TOC__
</StructureSection>
[[Category: D-amino-acid oxidase]]
[[Category: Asano, Y]]
[[Category: Asano, Y]]
[[Category: Ishitsubo, E]]
[[Category: Kawahara, N]]
[[Category: Nakano, S]]
[[Category: Nakano, S]]
[[Category: Tokiwa, H]]
[[Category: Tokiwa, H]]
[[Category: Kawahara, N]]
[[Category: Yasukawa, K]]
[[Category: Ishitsubo, E]]
[[Category: Amine oxidase]]
[[Category: Oxidoreductase]]
[[Category: R-2-phenylpyrrolidine binding form]]
[[Category: Variant of d-amino acid oxidase]]

Revision as of 07:02, 12 May 2016

Crystal structure of DAAO(Y228L/R283G) variant (R-2-phenylpyrrolidine binding form)Crystal structure of DAAO(Y228L/R283G) variant (R-2-phenylpyrrolidine binding form)

Structural highlights

4yjh is a 2 chain structure. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:, ,
Activity:D-amino-acid oxidase, with EC number 1.4.3.3
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum

Function

[OXDA_PIG] Regulates the level of the neuromodulator D-serine in the brain. Has high activity towards D-DOPA and contributes to dopamine synthesis. Could act as a detoxifying agent which removes D-amino acids accumulated during aging. Acts on a variety of D-amino acids with a preference for those having small hydrophobic side chains followed by those bearing polar, aromatic, and basic groups. Does not act on acidic amino acids.

4yjh, resolution 2.70Å

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OCA