1d1c: Difference between revisions
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|PDB= 1d1c |SIZE=350|CAPTION= <scene name='initialview01'>1d1c</scene>, resolution 2.3Å | |PDB= 1d1c |SIZE=350|CAPTION= <scene name='initialview01'>1d1c</scene>, resolution 2.3Å | ||
|SITE= | |SITE= | ||
|LIGAND= <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene> | |LIGAND= <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NMQ:N-METHYL+O-NITROPHENYL+AMINOETHYLDIPHOSPHATE+BERYLLIUM+TRIFLUORIDE'>NMQ</scene> | ||
|ACTIVITY= | |ACTIVITY= | ||
|GENE= | |GENE= | ||
|DOMAIN= | |||
|RELATEDENTRY=[[1d0x|1D0X]], [[1d0y|1D0Y]], [[1d0z|1D0Z]], [[1d1a|1D1A]], [[1d1b|1D1B]], [[1d1c|1D1C]] | |||
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1d1c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1d1c OCA], [http://www.ebi.ac.uk/pdbsum/1d1c PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1d1c RCSB]</span> | |||
}} | }} | ||
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[[Category: Thoden, J B.]] | [[Category: Thoden, J B.]] | ||
[[Category: Yount, R G.]] | [[Category: Yount, R G.]] | ||
[[Category: actin-binding]] | [[Category: actin-binding]] | ||
[[Category: motility]] | [[Category: motility]] | ||
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[[Category: nanolog]] | [[Category: nanolog]] | ||
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 19:32:36 2008'' | ||
Revision as of 19:32, 30 March 2008
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| , resolution 2.3Å | |||||||
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| Ligands: | , | ||||||
| Related: | 1D0X, 1D0Y, 1D0Z, 1D1A, 1D1B, 1D1C
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| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
DICTYOSTELIUM MYOSIN S1DC (MOTOR DOMAIN FRAGMENT) COMPLEXED WITH N-METHYL-O-NITROPHENYL AMINOETHYLDIPHOSPHATE BERYLLIUM TRIFLUORIDE.
OverviewOverview
The three-dimensional structures of the truncated myosin head from Dictyostelium discoideum myosin II complexed with dinitrophenylaminoethyl-, dinitrophenylaminopropyl-, o-nitrophenylaminoethyl-, m-nitrophenylaminoethyl-, p-nitrophenylaminoethyl-, and o-nitrophenyl-N-methyl-aminoethyl-diphosphate.beryllium fluoride have been determined to better than 2.3-A resolution. The structure of the protein and nucleotide binding pocket in these complexes is very similar to that of S1dC.ADP.BeF(x) (Fisher, A. J., Smith, C. A., Thoden, J., Smith, R., Sutoh, K., Holden, H. M., and Rayment, I. (1995) Biochemistry 34, 8960-8972). The position of the triphosphate-like moiety is essentially identical in all complexes. Furthermore, the alkyl-amino group plays the same role as the ribose by linking the triphosphate to the adenine binding pocket; however, none of the phenyl groups lie in the same position as adenine in S1dC.MgADP.BeF(x), even though several of these nucleotide analogs are functionally equivalent to ATP. Rather the former location of adenine is occupied by water in the nanolog complexes, and the phenyl groups are organized in a manner that attempts to optimize their hydrogen bonding interactions with this constellation of solvent molecules. A comparison of the kinetic and structural properties of the nanologs relative to ATP suggests that the ability of a substrate to sustain tension and to generate movement correlates with a well defined interaction with the active site water structure observed in S1dC.MgADP.BeF(x).
About this StructureAbout this Structure
1D1C is a Single protein structure of sequence from Dictyostelium discoideum. Full crystallographic information is available from OCA.
ReferenceReference
X-ray structures of the Dictyostelium discoideum myosin motor domain with six non-nucleotide analogs., Gulick AM, Bauer CB, Thoden JB, Pate E, Yount RG, Rayment I, J Biol Chem. 2000 Jan 7;275(1):398-408. PMID:10617631
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