ConSurf Quick Analysis Procedure: Difference between revisions
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# Check '''Yes''' there is a known protein structure. | # Check '''Yes''' there is a known protein structure. | ||
# Enter your [[PDB code]] and click the ''Next'' button. | # Enter your [[PDB code]] and click the ''Next'' button. | ||
# Choose one chain from the pull-down ''Chain Identifier'' menu. (ConSurf can only analyze [[Conservation%2C_Evolutionary#Use_Caution_When_Comparing_Conservation_of_Sequence-Different_Chains|one chain at a time]].) | |||
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Revision as of 01:27, 7 February 2016
Here is a quick procedure for coloring a protein molecule by evolutionary conservation. This procedure does not necessarily give the highest quality result, but will give you a preliminary result that is often sufficient. If you wish to take it further, see Limiting ConSurf Analysis to Proteins of a Single Function.
- Go to the ConSurf Server.
- Check Amino Acids.
- Check Yes there is a known protein structure.
- Enter your PDB code and click the Next button.
- Choose one chain from the pull-down Chain Identifier menu. (ConSurf can only analyze one chain at a time.)