User:Eric Martz/JSmol Notes: Difference between revisions
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*Proteopedia loads only amino acid alpha carbon atoms (or nucleic acid phosphorus atoms) and ligand atoms, since its ribbon view (secondary structure schematic) works fine without the other atoms. A prominent message is displayed that a ''simplified model'' is being shown, and there is a button to load the complete model. For registered users who are logged in, Proteopedia has a preference setting that will use Jmol_S instead of JSmol. | *Proteopedia loads only amino acid alpha carbon atoms (or nucleic acid phosphorus atoms) and ligand atoms, since its ribbon view (secondary structure schematic) works fine without the other atoms. A prominent message is displayed that a ''simplified model'' is being shown, and there is a button to load the complete model. For registered users who are logged in, Proteopedia has a preference setting that will use Jmol_S instead of JSmol. | ||
====Poor performance in Internet Explorer, Edge and Opera==== | ====Poor performance in Internet Explorer, Edge, Chrome and Opera==== | ||
JSmol runs in the javascript of the browser | JSmol runs in the javascript of the browser. Different web browsers operate JSmol with very different performances. '''Firefox runs JSmol best''' (Safari is equally good), and Firefox is usually OK (see note under table below). '''Internet Explorer is unacceptably slow''' (all versions, including version 11), and [http://www.netmarketshare.com it is the most widely used browser]. In '''Opera, rotation of the molecule is slow and jerky'''. | ||
*FirstGlance in Jmol detects the browser being used, and recommends a different browser when being displayed in Internet Explorer or Opera. | *FirstGlance in Jmol detects the browser being used, and recommends a different browser when being displayed in Internet Explorer or Opera. | ||