1a8v: Difference between revisions
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|PDB= 1a8v |SIZE=350|CAPTION= <scene name='initialview01'>1a8v</scene>, resolution 2.0Å | |PDB= 1a8v |SIZE=350|CAPTION= <scene name='initialview01'>1a8v</scene>, resolution 2.0Å | ||
|SITE= | |SITE= | ||
|LIGAND= <scene name='pdbligand=CU:COPPER (II) ION'>CU</scene> | |LIGAND= <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene> | ||
|ACTIVITY= | |ACTIVITY= | ||
|GENE= | |GENE= | ||
|DOMAIN= | |||
|RELATEDENTRY= | |||
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1a8v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1a8v OCA], [http://www.ebi.ac.uk/pdbsum/1a8v PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1a8v RCSB]</span> | |||
}} | }} | ||
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[[Category: Bogden, C.]] | [[Category: Bogden, C.]] | ||
[[Category: Fass, D.]] | [[Category: Fass, D.]] | ||
[[Category: rho protein]] | [[Category: rho protein]] | ||
[[Category: rna-binding]] | [[Category: rna-binding]] | ||
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[[Category: transcription termination]] | [[Category: transcription termination]] | ||
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 18:35:47 2008'' | ||
Revision as of 18:35, 30 March 2008
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| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
STRUCTURE OF THE RNA-BINDING DOMAIN OF THE RHO TRANSCRIPTION TERMINATOR
OverviewOverview
The E. coli Rho protein disengages newly transcribed RNA from its DNA template, helping terminate certain transcripts. We have determined the X-ray crystal structure of the RNA-binding domain of Rho complexed to an RNA ligand. Filters that screen both ligand size and chemical functionality line the primary nucleic acid-binding site, imparting sequence specificity to a generic single-stranded nucleic acid-binding fold and explaining the preference of Rho for cytosine-rich RNA. The crystal packing reveals two Rho domain protomers bound to a single RNA with a single base spacer, suggesting that the strong RNA-binding sites of Rho may arise from pairing of RNA-binding modules. Dimerization of symmetric subunits on an asymmetric ligand is developed as a model for allosteric control in the action of the intact Rho hexamer.
About this StructureAbout this Structure
1A8V is a Single protein structure of sequence from Escherichia coli. Full crystallographic information is available from OCA.
ReferenceReference
The structural basis for terminator recognition by the Rho transcription termination factor., Bogden CE, Fass D, Bergman N, Nichols MD, Berger JM, Mol Cell. 1999 Apr;3(4):487-93. PMID:10230401
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