Proteopedia

DNA polymerase: Difference between revisions

← Older editNewer edit →
Michal Harel (talk | contribs)
31,761 edits
No edit summary
Michal Harel (talk | contribs)
31,761 edits
No edit summary
Line 28: Line 28:
{{#tree:id=OrganizedByTopic|openlevels=0|
{{#tree:id=OrganizedByTopic|openlevels=0|


*Family A
*DNA polymerase I


**[[2ajq]] – T7Dpo (mutant) + thioredoxin (mutant) + DNA - Enterobacteria phage T7<br />
**[[1taq]] – TaDpo I - ''Thermus aquaticus''<br />
**[[1t7p]] - T7Dpo (mutant) + thioredoxin + DNA<br />
**[[1zyq]], [[1x9m]], [[1x9s]], [[1x9w]], [[1tk0]], [[1skr]], [[1sks]], [[1skw]], [[1sl0]], [[1sl1]], [[1sl2]], [[1t7p]] - T7Dpo (mutant) + thioredoxin + DNA + nucleotide<br />
**[[1t8e]], [[1tk5]], [[1tk8]], [[1tkd]] - T7Dpo + thioredoxin + DNA + nucleotide<br />
**[[4i9l]] – RB69Dpo (mutant) – Enterobacteria phage RB69<br />
**[[4i9q]], [[4j2a]], [[4j2b]], [[4j2d]], [[4j2e]], [[4khn]], [[4khq]], [[4khs]], [[4khu]], [[4khw]], [[4khy]], [[4ki4]], [[4ki6]], [[4m3r]], [[4m3t]], [[4m3u]], [[4m3w]], [[4m3x]], [[4m3y]], [[4m3z]], [[4m41]], [[4m42]], [[4m45]] – RB69Dpo (mutant) + DNA<br />
**[[2gv9]] – Dpo – ''Herpes simplex'' virus<br />
**[[2kzz]], [[1d8y]], [[2kzm]] – EcDpo I klenow fragment - ''Escherichia coli''<br />
**[[1qsl]] - EcDpo I klenow fragment + DNA<br />
**[[1kfs]], [[1krp]], [[1ksp]], [[1kln]] - EcDpo I klenow fragment (mutant) + DNA<br />
**[[1kfd]], [[1dpi]] - EcDpo I klenow fragment + nucleotide<br />
**[[1d9d]], [[1d9f]], [[2kfn]] - EcDpo I klenow fragment + DNA + nucleotide<br />
**[[2kfz]] - EcDpo I klenow fragment (mutant) + DNA + nucleotide<br />
**[[1taq]] – TaDpo I (mutant) - ''Thermus aquaticus''<br />
**[[1jxe]] – TaDpo I Stoffel fragment<br />
**[[1jxe]] – TaDpo I Stoffel fragment<br />
**[[1ktq]] - TaDpo I klenow fragment<br />
**[[1ktq]] - TaDpo I klenow fragment<br />
**[[5ktq]] – TaDpo I + nucleotide<br />
**[[5ktq]] – TaDpo I + nucleotide<br />
**[[3ojs]], [[3oju]], [[1tau]], [[4dle]], [[4dlg]], [[4elt]], [[4elu]], [[4elv]] - TaDpo I + DNA<br />
**[[3ojs]], [[3oju]], [[1tau]], [[4dle]], [[4dlg]], [[4elt]], [[4elu]], [[4elv]] - TaDpo I + DNA<br />
**[[3po4]], [[3po5]], [[3rtv]], [[3sv3]], [[3sv4]], [[3syz]], [[3sz2]], [[4c8k]], [[4c8l]], [[4c8m]], [[4c8n]], [[4c8o]], [[4cch]] - TaDpo I klenow fragment + DNA<br />
**[[4flt]], [[4flu]], [[4flv]], [[4flw]], [[4flx]], [[4fly]], [[4flz]], [[4fm0]], [[4fm1]], [[4fm2]] – Dpo I + DNA – ''Pyrococcus abyssi''<br />
**[[4bwm]], [[4bwj]] - TaDpo I klenow fragment + DNA + RNA<br />
**[[1s5j]] – SsDpo I - ''Sulfolobus solfataricus''<br />
**[[3py8]] - TaDpo I klenow fragment (mutant) + DNA<br />
**[[3eyz]] - GsDpo I (mutant) + DNA - ''Geobacillus stearothermophilus''<br />
**[[3m8r]], [[3m8s]], [[3lwl]], [[3lwm]], [[1qss]], [[1qsy]], [[1qtm]], [[2ktq]], [[3ktq]], [[4ktq]], [[3rr7]], [[3rr8]], [[3rrg]], [[3rrh]], [[3t3f]], [[4df4]], [[4df8]], [[4dfj]], [[4dfk]], [[4dfm]], [[4dfp]]- TaDpo I klenow fragment + DNA + nucleotide<br />
**[[3ez5]] - GsDpo I (mutant) + DNA + nucleotide <br />
**[[4n56]], [[4n5s]], [[4xiu]] - TaDpo I klenow fragment (mutant) + DNA + nucleotide<br />
**[[3pv8]], [[3px0]], [[3px4]], [[3px6]], [[4dqi]], [[4dqp]], [[4dqq]], [[4dqr]], [[4dqs]], [[4ds4]], [[4ds5]], [[4dse]], [[4dsf]], [[4e0d]], [[4ez6]], [[4ez9]], [[4f2r]], [[4f2s]], [[4f3o]], [[4f4k]], [[4f8r]] - GkDpo I (mutant) + DNA – ''Geobacillus kaustophilus''<br />
**[[1xwl]] - GsDpo I fragment  - ''Geobacillus stearothermophilus''<br />
 
**[[2xo7]], [[3hp6]], [[3hpo]], [[2hhq]], [[2hhs]], [[2hht]], [[2hhu]], [[2hhv]], [[2hhw]], [[2hhx]], [[2hvh]], [[2hvi]], [[2hw3]], [[1xc9]], [[1ua0]], [[1ua1]], [[1njw]], [[1njx]], [[1njy]], [[1njz]], [[1nk0]], [[1nk4]], [[1nk5]], [[1nk6]], [[1nk7]], [[1nk8]], [[1nk9]], [[1nkb]], [[1nkc]], [[1nke]], [[1l3s]], [[2bdp]], [[4bdp]], [[2xy5]], [[2xy6]], [[2xy7]], [[2y1i]], [[2y1j]], [[3tan]], [[3tap]], [[3taq]], [[3tar]], [[3thv]], [[4b9l]], [[4b9m]], [[4b9n]], [[4b9s]], [[4b9t]], [[4b9u]], [[4b9v]] - GsDpo I fragment + DNA<br />  
*DNA polymerase I klenow fragment
**[[4dsi]], [[4dsj]], [[4dsk]], [[4dsl]], [[4dwi]] - GsDpo I fragment (mutant) + DNA<br />
 
**[[3ht3]], [[1u45]], [[1u47]], [[1u48]], [[1u49]], [[1u4b]], [[1l3t]], [[1l3u]], [[1l3v]], [[1l5u]], [[1lv5]], [[3bdp]], [[3ti0]], [[4o0i]], [[4uqg]] - GsDpo I fragment + DNA + nucleotide<br />
**[[2kzz]], [[1d8y]], [[2kzm]] – EcDpo I - ''Escherichia coli''<br />
**[[3ti0]] - GsDpo I fragment + DNA + nucleotide - ''Bacillus''<br />
**[[1qsl]] - EcDpo I  + DNA<br />
**[[3ikm]] - hDpo γ1+γ2 - human<br />
**[[1kfs]], [[1krp]], [[1ksp]], [[1kln]] - EcDpo I  (mutant) + DNA<br />
**[[3ikl]], [[2g4c]] - hDpo γ2<br />
**[[1kfd]], [[1dpi]] - EcDpo I  + nucleotide<br />
**[[4xvi]], [[4xvk]], [[4xvl]], [[4xvm]] – hDpo nu + DNA<br />
**[[1d9d]], [[1d9f]], [[2kfn]] - EcDpo I  + DNA + nucleotide<br />
**[[4p4m]], [[4p4o]], [[4p4p]] - Dpo β + DNA + nucleotide – ''Leishmania infantum''<br />
**[[2kfz]] - EcDpo I  (mutant) + DNA + nucleotide<br />
**[[1ktq]] - TaDpo I <br />
**[[3po4]], [[3po5]], [[3rtv]], [[3sv3]], [[3sv4]], [[3syz]], [[3sz2]], [[4c8k]], [[4c8l]], [[4c8m]], [[4c8n]], [[4c8o]], [[4cch]] - TaDpo I + DNA<br />
**[[4bwm]], [[4bwj]] - TaDpo I + DNA + RNA<br />
**[[3py8]] - TaDpo I (mutant) + DNA<br />
**[[3m8r]], [[3m8s]], [[3lwl]], [[3lwm]], [[1qss]], [[1qsy]], [[1qtm]], [[2ktq]], [[3ktq]], [[4ktq]], [[3rr7]], [[3rr8]], [[3rrg]], [[3rrh]], [[3t3f]], [[4df4]], [[4df8]], [[4dfj]], [[4dfk]], [[4dfm]], [[4dfp]] - TaDpo I + DNA + nucleotide<br />
**[[4n56]], [[4n5s]], [[4xiu]] - TaDpo I (mutant) + DNA + nucleotide<br />
**[[1xwl]] - GsDpo I <br />
**[[2xo7]], [[3hp6]], [[3hpo]], [[2hhq]], [[2hhs]], [[2hht]], [[2hhu]], [[2hhv]], [[2hhw]], [[2hhx]], [[2hvh]], [[2hvi]], [[2hw3]], [[1xc9]], [[1ua0]], [[1ua1]], [[1njw]], [[1njx]], [[1njy]], [[1njz]], [[1nk0]], [[1nk4]], [[1nk5]], [[1nk6]], [[1nk7]], [[1nk8]], [[1nk9]], [[1nkb]], [[1nkc]], [[1nke]], [[1l3s]], [[2bdp]], [[4bdp]], [[2xy5]], [[2xy6]], [[2xy7]], [[2y1i]], [[2y1j]], [[3tan]], [[3tap]], [[3taq]], [[3tar]], [[3thv]], [[4b9l]], [[4b9m]], [[4b9n]], [[4b9s]], [[4b9t]], [[4b9u]], [[4b9v]] - GsDpo I + DNA<br />
**[[4dsi]], [[4dsj]], [[4dsk]], [[4dsl]], [[4dwi]] - GsDpo I (mutant) + DNA<br />
**[[3ht3]], [[1u45]], [[1u47]], [[1u48]], [[1u49]], [[1u4b]], [[1l3t]], [[1l3u]], [[1l3v]], [[1l5u]], [[1lv5]], [[3bdp]], [[3ti0]], [[4o0i]], [[4uqg]] - GsDpo I + DNA + nucleotide<br />


*Family B
*DNA polymerase II


**[[1ih7]] – EpDpo - Enterobacteria phage RB69<br />
**[[3maq]], [[3k57]], [[3k58]], [[3k59]], [[3k5l]], [[3k5m]] - EcDpo II (mutant) + DNA + nucleotide <br />
**[[3cfo]], [[4i9l]] – EpDpo (mutant)<br />
**[[1waf]], [[1waj]] - EpDpo  + nucleotide<br />
**[[3uiq]], [[4dtj]], [[4dtm]], [[4dtn]], [[4dto]], [[4dtp]], [[4dtr]], [[4dts]], [[4dtu]], [[4dtx]], [[4du1]], [[4du3]], [[4du4]] - EpDpo + DNA<br />
**[[3nci]], [[3lds]], [[3l8b]], [[3cq8]],[[3cfp]], [[3cfr]], [[3kd1]], [[3kd5]], [[4e3s]] - EpDpo (mutant) + DNA<br />
**[[3ndk]], [[3ne6]], [[3ngi]], [[3nhg]], [[3nae]], [[3lzj]], [[3lzi]], [[2ozs]], [[2p5g]], [[2dy4]], [[1q9x]], [[1q9y]], [[1ig9]],  [[3qep]], [[3rma]], [[3rmb]], [[3rmc]], [[3rmd]], [[3rwu]], [[3s9h]], [[3scx]], [[3si6]], [[3sjj]], [[3snn]], [[3spy]], [[3spz]], [[3sq0]], [[3sq1]], [[3sq2]], [[3sq4]], [[3sun]], [[3suo]], [[3sup]], [[3suq]], [[3tab]], [[3tae]], [[3taf]], [[3tag]], [[4i9q]], [[4j2a]], [[4j2b]], [[4j2d]], [[4j2e]], [[4khn]], [[4khq]], [[4khs]], [[4khu]], [[4khw]], [[4khy]], [[4ki4]], [[4ki6]], [[4m3r]], [[4m3t]], [[4m3u]], [[4m3w]], [[4m3x]], [[4m3y]], [[4m3z]], [[4m41]], [[4m42]], [[4m45]] - EpDpo (mutant) + DNA + nucleotide<br />
**[[1clq]], [[3iuq]] - EpDpo + DNA + nucleotide<br />
**[[2oyq]], [[2ozm]], [[2p5o]], [[2dtu]], [[3qei]], [[3qer]], [[3qes]], [[3qet]], [[3qev]], [[3qew]], [[3qex]], [[3qnn]], [[3qno]], [[4fj5]], [[4fj7]], [[4fj8]], [[4fj9]], [[4fjg]], [[4fjh]], [[4fji]], [[4fjj]], [[4fjk]], [[4fjl]], [[4fjm]], [[4fjn]], [[4fjx]], [[4fk0]], [[4fk2]], [[4fk4]] - EpDpo (mutant) + DNA + nucleotide analog<br />
**[[2atq]] – EpDpo + GP32<br />
**[[1noy]] – T4Dpo + DNA - Enterobacteria phage T4<br />
**[[1noz]] – T4Dpo residues 1-388<br />
**[[2ex3]] – Dpo (mutant) + DNA terminal protein – Bacillus phage φ29<br />
**[[2py5]], [[2pzs]], [[1xhz]], [[1xi1]] – BpDpo (mutant) + DNA <br />
**[[2pyj]], [[2pyl]] - BpDpo (mutant) + DNA + nucleotide<br />
**[[1xhx]] - BpDpo (mutant)<br />
**[[4e2i]] – hDpo α subunit β + large T antigen<br />
**[[4bpx]] - hDpo α catalytic subunit + DNA primase small subunit <br />
**[[4q5v]] - hDpo α catalytic subunit + DNA + RNA + aphidicolin <br />
**[[4qcl]] - hDpo α catalytic subunit + DNA + RNA + nucleotide <br />
**[[2keb]] - hDpo αB - NMR <br />
**[[1n5g]], [[1k0p]], [[1k18]] - hDpo α zinc finger domain- NMR<br />
**[[1zqj]], [[4lvs]], [[4m2y]], [[4m47]], [[4nlk]], [[4nln]], [[4nlz]], [[4nm1]], [[4nm2]], [[4tup]], [[4tuq]], [[4tur]], [[4tus]] – hDpo β + DNA<br />
**[[4m9g]], [[4m9h]], [[4m9j]], [[4m9l]], [[4m9n]], [[4r63]], [[4r64]], [[4r65]], [[4r66]] – hDpo β (mutant) + DNA<br />
**[[3rje]], [[3rjf]], [[3rjg]], [[3rjh]], [[3rji]], [[3rjj]], [[3rjk]], [[3tfr]], [[3tfs]], [[4mf2]], [[4mf8]], [[4mfa]], [[4mfc]], [[4mff]], [[4nxz]], [[4ny8]], [[4o5c]], [[4o5e]], [[4o5k]], [[4o9m]], [[4p2h]], [[4pgq]], [[4pgx]], [[4pha]], [[4phd]], [[4uaw]], [[4uay]], [[4uaz]], [[4ub1]], [[4ub2]], [[4ub3]], [[4ub4]], [[4ub5]], [[4ubb]], [[4ubc]] - hDpo β + nucleotide + DNA<br />
**[[4ppx]] - hDpo β + spiroiminohydantoin + DNA<br />
**[[3e0j]] - hDpo δ2+δ3<br />
**[[3mr4]], [[3mr2]], [[3mr3]], [[3mr5]], [[3mr6]] - hDpo ε catalytic core + DNA + nucleotide<br />
**[[3tq1]], [[4j9k]], [[4j9l]], [[4j9m]], [[4j9n]], [[4j9o]], [[4j9p]], [[4j9q]], [[4j9r]], [[4j9s]] - hDpo η catalytic core + DNA<br />
**[[4dl2]], [[4dl3]], [[4dl4]], [[4dl5]], [[4dl6]], [[4dl7]], [[4eey]] - hDpo η + DNA + nucleotide<br />
**[[3oiq]] - yDpo α + cell division control protein 13 – yeast<br />
**[[3flo]], [[3lgb]] - yDpo α subunits A,B<br />
**[[4b08]], [[4fvm]] - yDpo α  subunit A<br />
**[[4fxd]], [[4fyd]] - yDpo α  subunit A + RNA + DNA<br />
**[[3iay]] - yDpo δ catalytic subunit + DNA<br />
**[[3oha]], [[3ohb]], [[3mfh]] - yDpo ε (mutant) + DNA<br />
**[[3mfi]], [[4m8o]] - yDpo ε (mutant) + DNA + nucleotide <br />
**[[2r8j]], [[2r8k]], [[4ptf]] - yDpo ε catalytic domain + DNA + nucleotide <br />
**[[2xgp]], [[2xgq]], [[2wtf]] - yDpo ε + DNA<br />
**[[3maq]], [[3k57]], [[3k58]], [[3k59]], [[3k5l]], [[3k5m]] - EcDpo II (mutant) + DNA + nucleotide<br />  
**[[3k5n]] - EcDpo II (mutant) + DNA<br />
**[[3k5n]] - EcDpo II (mutant) + DNA<br />
**[[3k5o]], [[1q8i]] - EcDpo II (mutant)<br />
**[[3k5o]], [[1q8i]] - EcDpo II (mutant) <br />
**[[3a2f]] - PfDpo + PCNA - ''Pyrococcus furiosus''<br />
**[[3o59]] - PhDpo II large subunit]] - ''Pyrococcus horikoshii''<br />
**[[2jgu]], [[4ahc]] - PfDpo<br />
**[[2kxe]] - PhDpo II small subunit<br />
**[[4ail]] – PfDpo + DNA<br />
**[[1qqc]] – DeDpo II – ''Desulfurococcus''<br />
**[[1tgo]] - TgDpo – ''Thermococcus gorgonarius''<br />
**[[2vwj]] – TgDpo (mutant) + DNA <br />
**[[2vwk]] - TgDpo (mutant)<br />
**[[2xhb]] - Dpo (mutant) + DNA + ''Thermococcus gorgonarius''<br />
**[[1wn7]], [[1wns]] – TkDpo B - ''Thermococcus kodakarensis''<br />
**[[4k8z]] - TkDpo (mutant) + DNA<br />
**[[1qht]] - ThDpo (mutant) – ''Thermococcus''<br />
**[[4k8x]] - ThDpo (mutant) + DNA<br />
**[[1d5a]] – DeDpo – ''Desulfurococcus''<br />
**[[4flt]], [[4flu]], [[4flv]], [[4flw]], [[4flx]], [[4fly]], [[4flz]], [[4fm0]], [[4fm1]], [[4fm2]] – Dpo + DNA – ''Pyrococcus abyssi''


*Family C
*DNA polymerase III subunit alpha


**[[2hnh]], [[2hqa]] - EcDpo III subunit α catalytic fragment<br />
**[[2hnh]], [[2hqa]] - EcDpo III subunit α catalytic fragment<br />
**[[4jom]] - EcDpo III α subunit (mutant)<br />
**[[4jom]] - EcDpo III α subunit catalytic fragment (mutant)<br />
**[[2hpi]], [[2hpm]] - TaDpo III α subunit<br />
**[[2hpi]], [[2hpm]] - TaDpo III α subunit<br />
**[[3e0d]] - TaDpo III α subunit + DNA<br />
**[[3e0d]] - TaDpo III α subunit + DNA<br />
**[[3f2b]], [[3f2c]], [[3f2d]], [[4iqj]] – GkDpo III α subunit + DNA + nucleotide <br />
**[[3f2b]], [[3f2c]], [[3f2d]], [[4iqj]] – GkDpo III α subunit + DNA + nucleotide <br />
**[[1zd7]], [[1zde]], [[3nzm]] - SyDpo III α subunit – Synechocystis<br />
**[[1zd7]], [[1zde]], [[3nzm]] - SyDpo III α subunit – ''Synechocystis''<br />
**[[4gig]] - SyDpo III α subunit (mutant) <br />
**[[4gig]] - SyDpo III α subunit (mutant) <br />
**[[2keq]], [[4kl5]], [[4kl6]] - NpDpo III α subunit – ''Nostoc punctiforme''<br />
**[[2keq]], [[4kl5]], [[4kl6]] - NpDpo III α subunit – ''Nostoc punctiforme''<br />
**[[4lx3]] - NpDpo III α subunit + nucleic acid binding tRNA/helicase<br />
**[[4lx3]] - NpDpo III α subunit + nucleic acid binding tRNA/helicase<br />
**[[1ok7]] - EcDpo III + EcDpo IV C-terminal<br />
**[[1ok7]] - EcDpo III residues 1-366 + EcDpo IV C-terminal<br />
**[[1mmi]], [[2pol]], [[4k3s]], [[4pnv]], [[4pnw]] - EcDpo III subunit β<br />
 
**[[2xur]], [[3f1v]], [[3pwe]] - EcDpo III subunit β (mutant)<br />
*DNA polymerase III subunit beta
 
**[[mmi]], [[2pol]], [[4k3s]], [[4pnv]], [[4pnw]] - EcDpo III subunit β<br />
**[[2xur]], [[3f1v]], [[3pwe]] - EcDpo III subunit β (mutant) <br />
**[[3d1e]] - EcDpo III subunit β + EcDpo II C-terminal<br />
**[[3d1e]] - EcDpo III subunit β + EcDpo II C-terminal<br />
**[[1unn]] - EcDpo III subunit β + EcDpo IV little finger<br />
**[[1unn]] - EcDpo III subunit β + EcDpo IV little finger<br />
**[[3d1g]], [[3qsb]], [[4k3k]], [[4k3l]], [[4mjp]], [[4mjq]], [[4mjr]], [[4n94]], [[4n95]], [[4n96]], [[4n97]], [[4n98]], [[4n99]], [[4n9a]], [[4ovf]], [[4ovg]], [[4ovh]], [[4pnu]] - EcDpo III subunit β + inhibitor<br />
**[[3d1g]], [[3qsb]], [[4k3k]], [[4k3l]], [[4mjp]], [[4mjq]], [[4mjr]], [[4n94]], [[4n95]], [[4n96]], [[4n97]], [[4n98]], [[4n99]], [[4n9a]], [[4ovf]], [[4ovg]], [[4ovh]], [[4pnu ]] - EcDpo III subunit β + inhibitor<br />
**[[3bep]] - EcDpo III subunit β + DNA<br />
**[[3bep]] - EcDpo III subunit β + DNA<br />
**[[3d1f]], [[4k3m]], [[4k3o]], [[4k3p]], [[4k3q]], [[4k3r]], [[4k74]] - EcDpo III β subunit + polypeptide<br />
**[[3d1f]], [[3q4j]], [[3q4k]], [[3q4l]], [[4k3l]], [[4k3m]], [[4k3o]], [[4k3p]], [[4k3q]], [[4k3r]], [[4k74]] - EcDpo III β subunit + polypeptide<br />
**[[2avt]] - Dpo III β subunit – ''Streptococcus pyogenes''<br />
**[[2avt]] - Dpo III β subunit – ''Streptococcus pyogenes''<br />
**[[2awa]] - Dpo III β subunit – ''Streptococcus pneumoniae''<br />
**[[2awa]] - Dpo III β subunit – ''Streptococcus pneumoniae''<br />
**[[2p1j]] – TmDpo III exonuclease domain – ''Thermotoga maritima''<br />
**[[2p1j]] – TmDpo III exonuclease domain – ''Thermotoga maritima''<br />
**[[1vpk]] - TmDpo III β subunit<br />
**[[1vpk]] - TmDpo III β subunit<br />
**[[3q4j]], [[3q4k]], [[3q4l]], [[3d1f]] - EcDpo III β subunit + peptide<br />
**[[4k3s]] - EcDpo III β subunit<br />
**[[1njf]], [[1njg]] - EcDpo III subunit γ N-terminal domains 1-2<br />
**[[3t0p]] - Dpo III β subunit – ''Eubacterium rectale''<br />
**[[1jqj]], [[1jql]] - EcDpo III subunit β,δ (mutant) <br />
**[[4tr6]] - Pol III β subunit – ''Bacillus subtilis''<br />
**[[3p16]], [[3rb9]], [[4tr7]] - Pol III β subunit – ''Mycobacterrium tuberculosis''<br />
**[[4tr8]] - PaPol III β subunit – ''Pseudomonas aeruginosa''<br />
**[[4tsz]] - PaPol III β subunit + peptide<br />
 
*DNA polymerase III subunit gamma
 
**[[1njf]], [[1njg]] - EcDpo III subunit γ N-terminal domains 1-2<br />
**[[2gno]] - TmDpo III γ subunit<br />
**[[2gno]] - TmDpo III γ subunit<br />
**[[1jqj]], [[1jql]] - EcDpo III subunit β, δ(mutant)<br />
**[[1xxh]], [[1jr3]] - EcDpo III subunit γ,δ,δ’ <br />
**[[1a5t]] - EcDpo III subunit δ’<br />
**[[1xxi]] - EcDpo III subunit γ,δ,δ’ + nucleotide<br />
**[[1xxh]], [[1jr3]] - EcDpo III subunit γ, δ, δ' <br />
 
**[[1xxi]] - EcDpo III subunit γ, δ, δ' + nucleotide<br />
*DNA polymerase III subunit delta
 
**[[1jqj]], [[1jql]] - EcDpo III subunit β,δ (mutant) <br />
**[[1a5t]] - EcDpo III subunit δ’ <br />
**[[1xxh]], [[1jr3]] - EcDpo III subunit γ,δ,δ’ <br />
**[[1xxi]] - EcDpo III subunit γ,δ,δ’ + nucleotide<br />
**[[3glh]] - EcDpo III subunit δ,δ’,τ <br />
**[[3glf]] - EcDpo III subunit δ,δ’,τ + DNA<br />
**[[3gli]] - EcDpo III subunit δ,δ’,τ,ξ + DNA<br />
**[[3glg]] - EcDpo III subunit δ,δ’,τ (mutant) + DNA<br />
 
*DNA polymerase III subunit epsilon
 
**[[2gui]] – EcDpo III subunit ε N-terminal<br />
**[[2gui]] – EcDpo III subunit ε N-terminal<br />
**[[4gx8]], [[4gx9]] - EcDpo III subunit α/ε<βρ />
**[[1j53]], [[1j54]] - EcDpo III subunit ε N-terminal exonuclease domain<br />
**[[1j53]], [[1j54]], [[2gui]] - EcDpo III subunit ε N-terminal exonuclease domain<br />
**[[2ido]] - EcDpo III subunit ε + HOT protein<br />
**[[2ido]] - EcDpo III subunit ε + HOT protein<br />
**[[3glh]] - EcDpo III subunit δ, δ', τ <br />  
**[[4gx8]] - EcDpo III ε subunit/ EcDpo III α subunit<br />
**[[3glf]] - EcDpo III subunit δ, δ', τ + DNA<br />
**[[4gx9]] - EcDpo III ε subunit/ EcDpo III α subunit (mutant)<br />
**[[3gli]] - EcDpo III subunit δ, δ', τ, ξ + DNA<br />
**[[2xy8]] - EcDpo III subunit ε,θ<br />
**[[3glg]] - EcDpo III subunit δ, δ', τ mutant DNA<br />
 
*DNA polymerase III subunit tau
 
**[[2aya]] - EcDpo III subunit τ <br />
**[[3glh]] - EcDpo III subunit δ,δ’,τ <br />
**[[3glf]] - EcDpo III subunit δ,δ’,τ + DNA<br />
**[[3gli]] - EcDpo III subunit δ,δ’,τ,ξ + DNA<br />
**[[3glg]] - EcDpo III subunit δ,δ’,τ (mutant) + DNA<br />
 
*DNA polymerase III subunit xi
 
**[[3gli]] - EcDpo III subunit δ,δ’,τ,ξ + DNA<br />
 
*DNA polymerase III subunit theta
 
**[[2xy8]] - EcDpo III subunit ε,θ<br />
**[[2xy8]] - EcDpo III subunit ε,θ<br />
**[[2axd]], [[2ae9]], [[1du2]] - EcDpo III subunit θ - NMR<br />
**[[2axd]], [[2ae9]], [[1du2]] - EcDpo III subunit θ - NMR<br />
**[[2aya]] - EcDpo III subunit τ<br />
 
**[[1em8]] - EcDpo III subunit φ, χ<br />
*DNA polymerase III subunit chi
 
**[[1em8]] - EcDpo III subunit ϕ,χ<br />
**[[3sxu]] - EcDpo III subunit ϕ,χ + peptide<br />
 
*DNA polymerase III subunit phi
 
**[[1em8]] - EcDpo III subunit ϕ,χ<br />
**[[3sxu]] - EcDpo III subunit ϕ,χ + peptide<br />
**[[3sxu]] - EcDpo III subunit ϕ,χ + peptide<br />
**[[1bgx]] – TaDpo + TP7 MAB<br />


*Family X 
*DNA polymerase IV


**[[3q8p]], [[3q8q]], [[3lk9]], [[3mby]], [[3isb]], [[3isc]], [[1zjm]], [[1tv9]], [[1tva]], [[1bpx]], [[1bpz]], [[1zqa]], [[1zqb]], [[1zqc]], [[1zqd]], [[1zqf]], [[1zqg]], [[1zqh]], [[1zqi]], [[1zaj]], [[1zqk]], [[1zql]], [[1zqm]], [[1zqn]], [[1zqo]], [[1zqp]], [[1zqq]], [[1zqr]], [[1zqs]], [[1zqt]], [[1zqu]], [[1zqv]], [[1zqw]], [[1zqx]], [[1zqy]], [[1zqz]], [[7ice]], [[7icf]], [[7ici]], [[7icj]], [[7icl]], [[7icm]], [[7icp]], [[7icr]], [[7ict]], [[7icu]], [[7icv]], [[8icb]], [[8icc]], [[9icj]], [[9ick]], [[9icl]], [[9icm]], [[9icp]], [[9icw]], [[9icx]], [[9icy]], [[7icg]], [[7ich]], [[7ick]], [[7icn]], [[7ico]], [[7icq]], [[7ics]], [[1zqe]], [[4gxi]], [[4gxj]], [[4gxk]], [[4kld]], [[4kle]], [[4klf]], [[4klg]], [[4klh]], [[4kli]], [[4klj]], [[4kll]], [[4klm]], [[4klo]], [[4klp]], [[4klq]], [[4kls]], [[4klt]], [[4klu]], [[1zqj]], [[4lvs]], [[4m2y]], [[4m47]], [[4nlk]], [[4nln]], [[4nlz]], [[4nm1]], [[4nm2]], [[3gdx]], [[3rh4]], [[3rh5]], [[3rh6]] - hDpo β + DNA<br />
**[[4ir1]], [[4ir9]], [[4irc]], [[4ird]], [[4irk]] - EcPol IV + DNA<br />
**[[3jpn]], [[3jpo]], [[3jpp]], [[3jpq]], [[3jpr]], [[3jpt]], [[3jps]], [[3isd]], [[3c2k]], [[3c2l]], [[3c2m]], [[2pxi]], [[2iso]], [[2isp]], [[2i9g]], [[2fmp]], [[2fmq]], [[2fms]], [[1zjn]], [[1mq2]], [[1mq3]], [[1bpy]], [[8ica]], [[8ice]], [[8icf]], [[8icg]], [[8ich]], [[8ici]], [[8icj]], [[8ick]], [[8icl]], [[8icm]], [[8icn]], [[8ico]], [[8icp]], [[8icq]], [[8icr]], [[8ics]], [[8ict]], [[8icu]], [[8icv]], [[8icw]], [[8icx]], [[8icz]], [[9ice]], [[9icg]], [[9ich]], [[9ici]], [[9icq]], [[9ics]], [[9ict]], [[9icu]], [[9icv]], [[9icr]], [[9icn]], [[9ico]], [[8icy]], [[9ica]], [[9icb]], [[9icc]], [[9icf]], [[4do9]], [[4doa]], [[4dob]], [[4doc]], [[3rje]], [[3rjf]], [[3rjg]], [[3rjh]], [[3rji]], [[3rjj]], [[3rjk]], [[3tfr]], [[3tfs]] - hDpo β + DNA + nucleotide<br />
**[[4r8u]] - EcPol IV + DNA + nucleotide<br />
**[[2rdi]] - SsPol IV <br />
**[[3pr4]], [[3pr5]], [[2r8g]], [[2r8h]], [[2r8i]], [[2uvr]], [[2uvu]], [[2uvv]], [[2uvw]] - SsPol IV (mutant) + DNA + nucleotide <br />
**[[4juz]], [[4jv0]], [[4jv1]], [[4jv2]], [[4qw8]], [[4qw9]], [[4qwa]], [[4qwb]], [[4qwc]], [[4qwd]], [[4qwe]], [[4tqr]], [[4tqs]] - SsPol IV + DNA + nucleotide<br />
**[[2xc9]], [[3m9m]], [[3m9n]], [[3m9o]], [[2v4q]], [[2v4r]], [[2ago]], [[1ryr]], [[1rys]], [[2w9a]], [[2w9b]], [[2w9c]], [[3gii]], [[3gij]], [[3gik]], [[3gil]], [[3gim]], [[3qz7]], [[3qz8]], [[3pvx]], [[3pw0]], [[3pw2]], [[3pw4]], [[3pw5]], [[3pw7]], [[3raq]], [[3rax]], [[3rb0]], [[3rb3]], [[3rb4]], [[3rb6]], [[3rbd]], [[3rbe]], [[4hyk]], [[4fbt]], [[4fbu]], [[4g3i]] - SsPol IV + DNA<br />
**[[2xca]], [[2xcp]], [[3khg]], [[3khh]], [[3khl]], [[3khr]], [[2w8k]], [[2w8l]], [[2rdj]], [[2v9w]], [[2va2]], [[2va3]], [[2ia6]], [[2ibk]], [[2jef]], [[2jeg]], [[2jei]], [[2jej]], [[2imw]], [[2j6s]], [[2j6t]], [[2j6u]], [[2asd]], [[2asj]], [[2asl]], [[2atl]], [[2au0]], [[2c22]], [[2c28]], [[2c2d]], [[2c2e]], [[2c2r]], [[2agp]], [[2agq]], [[2bqr]], [[2bqu]], [[2br0]], [[2bq3]], [[1s9f]], [[1s97]], [[1s0m]], [[1s0n]], [[1s0o]], [[1s10]], [[1n48]], [[1n56]], [[1jx4]], [[1jxl]], [[3t5h]], [[3t5j]], [[3t5k]], [[3t5l]], [[3v6h]], [[3v6j]], [[3v6k]], [[4gc6]], [[4gc7]] - SsPol IV + DNA + nucleotide<br />
**[[3fds]] – SsPol IV + PCNA B + PCNA C<br />
**[[3bq2]], [[3bq0]] – SaPol IV + DNA – ''Sulfolobus acidocaldarius''<br />
**[[3bq1]], [[4f4w]], [[4f4x]], [[4f4y]], [[4f4z]], [[4f50]] - SaPol IV + DNA + nucleotide<br />
**[[4nlg]] - SaPol IV (mutant) + DNA<br />
**[[4dez]] – Pol IV – ''Mycobacterium smegmatis''<br />
 
*DNA polymerase from enterobacteria phage T7
 
**[[2ajq]] – T7Dpo (mutant) + thioredoxin (mutant) + DNA <br />
**[[1zyq]], [[1x9m]], [[1x9s]], [[1x9w]], [[1tk0]], [[1skr]], [[1sks]], [[1skw]], [[1sl0]], [[1sl1]], [[1sl2]], [[1t7p]] - T7Dpo (mutant) + thioredoxin + DNA + nucleotide<br />
**[[1t8e]], [[1tk5]], [[1tk8]], [[1tkd]] - T7Dpo + thioredoxin + DNA + nucleotide<br />
 
*DNA polymerase
 
**[[2gv9]] – Dpo – Herpes simplex virus<br />
**[[1bgx]] – TaDpo + TP7 antibody<br />
**[[1ih7]] – EpDpo]] - Enterobacteria phage RB69<br />
**[[3cfo]], [[4i9l]] – EpDpo (mutant) <br />
**[[1waf]], [[1waj]] - EpDpo  + nucleotide<br />
**[[3uiq]], [[4dtj]], [[4dtm]], [[4dtn]], [[4dto]], [[4dtp]], [[4dtr]], [[4dts]], [[4dtu]], [[4dtx]], [[4du1]], [[4du3]], [[4du4]] - EpDpo + DNA<br />
**[[3nci]], [[3lds]], [[3l8b]], [[3cq8]], [[3cfp]], [[3cfr]], [[3kd1]], [[3kd5]], [[4e3s]] - EpDpo (mutant) + DNA <br />
**[[3ndk]], [[3ne6]], [[3ngi]], [[3nhg]], [[3nae]], [[3lzj]], [[3lzi]], [[2ozs]], [[2p5g]], [[2dy4]], [[1q9x]], [[1q9y]], [[1ig9]], [[3qep]], [[3rma]], [[3rmb]], [[3rmc]], [[3rmd]], [[3rwu]], [[3s9h]], [[3scx]], [[3si6]], [[3sjj]], [[3snn]], [[3spy]], [[3spz]], [[3sq0]], [[3sq1]], [[3sq2]], [[3sq4]], [[3sun]], [[3suo]], [[3sup]], [[3suq]], [[3tab]], [[3tae]], [[3taf]], [[3tag]], [[4i9q]], [[4j2a]], [[4j2b]], [[4j2d]], [[4j2e]], [[4khn]], [[4khq]], [[4khs]], [[4khu]], [[4khw]], [[4khy]], [[4ki4]], [[4ki6]], [[4m3r]], [[4m3t]], [[4m3u]], [[4m3w]], [[4m3x]], [[4m3y]], [[4m3z]], [[4m41]], [[4m42]], [[4m45]] - EpDpo (mutant) + DNA + nucleotide<br />
**[[1clq]], [[3iuq]] - EpDpo + DNA + nucleotide<br />
**[[2oyq]], [[2ozm]], [[2p5o]], [[2dtu]], [[3qei]], [[3qer]], [[3qes]], [[3qet]], [[3qev]], [[3qew]], [[3qex]], [[3qnn]], [[3qno]], [[4fj5]], [[4fj7]], [[4fj8]], [[4fj9]], [[4fjg]], [[4fjh]], [[4fji]], [[4fjj]], [[4fjk]], [[4fjl]], [[4fjm]], [[4fjn]], [[4fjx]], [[4fk0]], [[4fk2]], [[4fk4]] - EpDpo (mutant) + DNA + nucleotide analog<br />
**[[2atq]] – EpDpo + GP32<br />
**[[1noy]] – T4Dpo + DNA - Enterobacteria phage T4<br />
**[[1noz]] – T4Dpo residues 1-388<br />
**[[2ex3]] – BpDpo (mutant) + DNA terminal protein – Bacillus phage φ29<br />
**[[2py5]], [[2pzs]], [[1xhz]], [[1xi1]] – BpDpo (mutant) + DNA <br />
**[[2pyj]], [[2pyl]] - BpDpo (mutant) + DNA + nucleotide<br />
**[[1xhx]] - BpDpo (mutant) <br />
**[[3a2f]] - PfDpo + PCNA - ''Pyrococcus furiosus''<br />
**[[2jgu]], [[4ahc]] – PfDpo<br />
**[[4ail]] – PfDpo + DNA<br />
**[[1tgo]] - TgDpo – ''Thermococcus gorgonarius''<br />
**[[2vwj]], [[2xhb]] – TgDpo (mutant) + DNA <br />
**[[2vwk]] - TgDpo (mutant) <br />
**[[1wn7]], [[1wns]] – TkDpo B - ''Thermococcus kodakarensis''<br />
**[[4k8z]] - TkDpo (mutant) + DNA<br />
**[[1qht]] - ThDpo (mutant) – Thermococcus<br />
**[[4k8x]] - ThDpo (mutant) + DNA<br />
**[[1d5a]] – DeDpo <br />
 
*DNA polymerase alpha
 
**[[4e2i]] – hDpo α subunit β + large T antigen – human<br />
**[[4bpx]] - hDpo α catalytic subunit + DNA primase small subunit <br />
**[[4q5v]] - hDpo α catalytic subunit + DNA + RNA + aphidicolin <br />
**[[4qcl]] - hDpo α catalytic subunit + DNA + RNA + nucleotide <br />
**[[2keb]] - hDpo αB - NMR <br />
**[[1n5g]], [[1k0p]], [[1k18]] - hDpo α zinc finger domain – NMR<br />
 
*DNA polymerase beta
 
**[[4p4m]], [[4p4o]], [[4p4p]] - Dpo β + DNA + nucleotide – ''Leishmania infantum''<br />
**[[4ppx]] - hDpo β + spiroiminohydantoin + DNA<br />
**[[3q8p]], [[3q8q]], [[3lk9]], [[3mby]], [[3isb]], [[3isc]], [[1zjm]], [[1tv9]], [[1tva]], [[1bpx]], [[1bpz]], [[1zqa]], [[1zqb]], [[1zqc]], [[1zqd]], [[1zqf]], [[1zqg]], [[1zqh]], [[1zqi]], [[1zaj]], [[1zqk]], [[1zql]], [[1zqm]], [[1zqn]], [[1zqo]], [[1zqp1zqq]], [[1zqr]], [[1zqs]], [[1zqt]], [[1zqu]], [[1zqv]], [[1zqw]], [[1zqx]], [[1zqy]], [[1zqz]], [[7ice]], [[7icf]], [[7ici]], [[7icj]], [[7icl]], [[7icm]], [[7icp]], [[7icr]], [[7ict]], [[7icu]], [[7icv]], [[8icb]], [[8icc]], [[9icj]], [[9ick]], [[9icl]], [[9icm]], [[9icp]], [[9icw]], [[9icx]], [[9icy]], [[7icg]], [[7ich]], [[7ick]], [[7icn]], [[7ico]], [[7icq]], [[7ics]], [[1zqe]], [[4gxi]], [[4gxj]], [[4gxk]], [[4kld]], [[4kle]], [[4klf]], [[4klg]], [[4klh]], [[4kli]], [[4klj]], [[4kll]], [[4klm]], [[4klo]], [[4klp]], [[4klq]], [[4kls]], [[4klt]], [[4klu]], [[1zqj]], [[4lvs]], [[4m2y]], [[4m47]], [[4nlk]], [[4nln]], [[4nlz]], [[4nm1]], [[4nm2]], [[3gdx]], [[3rh4]], [[3rh5]], [[3rh6]], [[4tup]], [[4tuq]], [[4tur]], [[4tus]] - hDpo β + DNA<br />
**[[3jpn]], [[3jpo]], [[3jpp]], [[3jpq]], [[3jpr]], [[3jpt]], [[3jps]], [[3isd]], [[3c2k]], [[3c2l]], [[3c2m]], [[2pxi]], [[2iso]], [[2isp]], [[2i9g]], [[2fmp]], [[2fmq]], [[2fms]], [[1zjn]], [[1mq2]], [[1mq3]], [[1bpy]], [[8ica]], [[8ice]], [[8icf]], [[8icg]], [[8ich]], [[8ici]], [[8icj]], [[8ick]], [[8icl]], [[8icm]], [[8icn]], [[8ico]], [[8icp]], [[8icq]], [[8icr]], [[8ics]], [[8ict]], [[8icu]], [[8icv]], [[8icw]], [[8icx]], [[8icz]], [[9ice]], [[9icg]], [[9ich]], [[9ici]], [[9icq]], [[9ics]], [[9ict]], [[9icu]], [[9icv]], [[9icr]], [[9icn]], [[9ico]], [[8icy]], [[9ica]], [[9icb]], [[9icc]], [[9icf]], [[4do9]], [[4doa]], [[4dob]], [[4doc]], [[3rje]], [[3rjf]], [[3rjg]], [[3rjh]], [[3rji]], [[3rjj]], [[3rjk]], [[3tfr]], [[3tfs]], [[4mf2]], [[4mf8]], [[4mfa]], [[4mfc]], [[4mff]], [[4nxz]], [[4ny8]], [[4o5c]], [[4o5e]], [[4o5k]], [[4o9m]], [[4p2h]], [[4pgq]], [[4pgx]], [[4pha]], [[4phd]], [[4uaw]], [[4uay]], [[4uaz]], [[4ub1]], [[4ub2]], [[4ub3]], [[4ub4]], [[4ub5]], [[4ubb]], [[4ubc]] - hDpo β + DNA + nucleotide<br />
**[[2p66]], [[4f5n]] - hDpo β + DNA + nucleotide analog<br />
**[[2p66]], [[4f5n]] - hDpo β + DNA + nucleotide analog<br />
**[[4f5o]], [[4f5p]], [[4f5q]], [[4f5r]] - hDpo β (mutant) + DNA + nucleotide analog<br />
**[[4f5o]], [[4f5p]], [[4f5q]], [[4f5r]] - hDpo β (mutant) + DNA + nucleotide analog<br />
**[[3ogu]], [[4jwm]], [[4jwn]], [[4m9g]], [[4m9h]], [[4m9j]], [[4m9l]], [[4m9n]] - hDpo β (mutant) + DNA<br />
**[[3ogu]], [[4jwm]], [[4jwn]], [[4m9g]], [[4m9h]], [[4m9j]], [[4m9l]], [[4m9n]], [[4r63]], [[4r64]], [[4r65]], [[4r66]] - hDpo β (mutant) + DNA<br />
**[[2v6z]] - hDpo β N-terminal (mutant) - NMR<br />
**[[2v6z]] - hDpo β N-terminal (mutant)]] - NMR<br />
**[[3k75]], [[3lqc]] - hDpo β + DNA repair protein XRCC1<br />
**[[3k75]], [[3lqc]] - hDpo β + DNA repair protein XRCC1<br />
**[[1rpl]], [[2bpc]], [[1bpe]], [[1bpb]], [[1bpd]], [[3uxn]] - rDpo β – rat<br />
**[[2van]], [[1jn3]], [[3uxo]], [[3v7l]]- rDpo β (mutant) <br />
**[[1dk2]], [[1dk3]], [[1bno]], [[1bnp]] - rDpo β N-terminal – NMR<br />
**[[1nom]] - rDpo β C-terminal<br />
**[[1huo]], [[1huz]], [[3v7j]] - rDpo β + DNA<br />
**[[3uxp]], [[3v72]], [[3v7k]] - rDpo β (mutant) + DNA    <br /> 
**[[1bpe]] - rDpo β + nucleotide<br />
**[[2bpf]], [[2bpg]] - rDpo β + DNA + nucleotide<br />
**[[3au2]] – TtDpo β + GTP – ''Thermus thermophilus''<br />
**[[3b0x]], [[3b0y]] – TtDpo β (mutant) + GTP<br />
**[[3au6]], [[3auo]] – TtDpo β + GTP + DNA<br />
*DNA polymerase gamma
**[[3ikm]] - hDpo γ1+ γ2 <br />
**[[3ikl]], [[2g4c]] - hDpo γ2<br />
**[[2jw5]] - hDpo λ BRCT domain<br />
**[[2jw5]] - hDpo λ BRCT domain<br />
**[[1xsl]] - hDpo λ catalytic domain<br />
**[[1xsl]] - hDpo λ catalytic domain<br />
Line 182: Line 253:
**[[4k4g]], [[4k4h]], [[4k4i]] - hDpo λ + DNA + nucleotide analog<br />
**[[4k4g]], [[4k4h]], [[4k4i]] - hDpo λ + DNA + nucleotide analog<br />
**[[3mgi]], [[3hw8]], [[3hwt]], [[3hx0]], [[2pfo]], [[2pfp]], [[2pfq]] - hDpo λ (mutant) + DNA + nucleotide<br />
**[[3mgi]], [[3hw8]], [[3hwt]], [[3hx0]], [[2pfo]], [[2pfp]], [[2pfq]] - hDpo λ (mutant) + DNA + nucleotide<br />
*DNA polymerase delta
**[[3e0j]] - hDpo δ2+ δ3<br />
**[[3upq]], [[3uq0]], [[3uq2]] - hDpo δ (mutant) + DNA<br />
**[[3upq]], [[3uq0]], [[3uq2]] - hDpo δ (mutant) + DNA<br />
**[[4fo6]] - hDpo δ (mutant) + DNA + nucleotide analog<br />
**[[4fo6]] - hDpo δ (mutant) + DNA + nucleotide analog<br />
*DNA polymerase epsilon
**[[3mr4]], [[3mr2]], [[3mr3]], [[3mr5]], [[3mr6]] - hDpo ε catalytic core + DNA + nucleotide<br />
*DNA polymerase zeta
**[[3abd]], [[3abe]] - hDpo ζ catalytic subunit Rev3 + mitotic spindle assembly checkpoint protein Rev7<br />
**[[3vu7]], [[4gk0]] - hDpo  ζ  catalytic subunit + DNA repair protein Rev1 + MAD2B<br />
**[[4fjo]], [[4gk5]] - hDpo κ + hDpo  ζ  catalytic subunit + DNA repair protein Rev1 + MAD2B<br />
*DNA polymerase eta
**[[2i5o]] - hDpo η ubiquitin-binding zinc finger – NMR<br />
**[[3si8]] - hDpo η +  DNA<br />
**[[2lsj]], [[2lsi]] - hDpo η + DNA repair protein Rev1<br />
**[[4dl2]], [[4dl3]], [[4dl4]], [[4dl5]], [[4dl6]], [[4dl7]], [[4eey]], [[4ecq]], [[4ecr]], [[4ecs]], [[4ect]], [[4ecu]], [[4ecv]], [[4ecw]], [[4ecx]], [[4ecy]], [[4ecz]], [[4ed0]], [[4ed1]], [[4ed2]], [[4ed3]], [[4ed6]], [[4ed7]], [[4ed8]], [[4o3n]], [[4o3o]], [[4o3p]], [[4o3q]], [[4o3r]], [[4o3s]], [[4q8e]], [[4q8f]], [[4rnm]], [[4rnn]], [[4rno]], [[4x0p]], [[4x0q]] - hDpo η + DNA + nucleotide<br />
**[[5aga]] - hDpo η + nucleotide<br />
*DNA polymerase iota
**[[3q8r]], [[3q8s]], [[3h4b]], [[3h4d]], [[3gv5]], [[3gv7]], [[3gv8]], [[3epg]], [[3epi]], [[2fll]], [[2fln]], [[2flp]], [[2dpi]], [[2dpj]], [[2alz]], [[1zet]], [[1t3n]], [[4ebc]], [[4ebd]], [[4ebe]], [[4fs1]], [[4fs2]], [[4eyh]], [[4eyi]], [[3g6v]], [[3g6x]], [[3g6y]] - hDpo ι + DNA + nucleotide<br />
**[[3ngd]], [[3osn]], [[3h40]] - hDpo ι catalytic fragment + DNA <br />
**[[2ktf]] - hDpo ι + ubiquitin<br />
**[[2l0f]], [[2l0g]] - hDpo ι + ubiquitin – NMR<br />
**[[2khu]] - hDpo ι ubiquitin binding motif – NMR<br />
**[[2khw]] - hDpo ι ubiquitin binding motif + ubiquitin – NMR<br />
**[[2kwu]], [[2kwv]] - mDpo ι C-terminal + ubiquitin - NMR<br />
**[[3ai4]] - mDpo ι/yEGFP<br />
*DNA polymerase kappa
**[[1t94]] - hDpo κ<br />
**[[3in5]] - hDpo κ + DNA<br />
**[[2w7o]], [[2w7p]], [[2oh2]], [[3pzp]] - hDpo κ + DNA + nucleotide<br />
**[[2lsi]] - hDpo κ peptide + hRev1<br />
**[[2lsk]] - mDpo κ + DNA repair protein Rev1<br />
*DNA polymerase mu
**[[2htf]], [[2dun]] - hDpo μ BRCT domain – NMR<br />
**[[2htf]], [[2dun]] - hDpo μ BRCT domain – NMR<br />
**[[2ihm]] - mDpo μ catalytic domain + DNA – mouse<br />
**[[2ihm]] - mDpo μ catalytic domain + DNA – mouse<br />
**[[1rpl]], [[2bpc]], [[1bpe]], [[1bpb]], [[1bpd]], [[3uxn]] - rDpo β – rat<br />
 
**[[2van]], [[1jn3]], [[3uxo]], [[3v7l]] - rDpo β (mutant)<br />
*DNA polymerase nu
**[[1dk2]], [[1dk3]], [[1bno]], [[1bnp]] - rDpo β N-terminal – NMR<br />
 
**[[1nom]] - rDpo β C-terminal<br />
**[[4xvi]], [[4xvk]], [[4xvl]], [[4xvm]] – hDpo ν catalytic domain + DNA<br />
**[[1huo]], [[1huz]], [[3v7j]] - rDpo β + DNA<br />
 
**[[3uxp]], [[3v72]], [[3v7k]] - rDpo β (mutant) + DNA<br />
*DNA polymerase chi
**[[1bpe]] - rDpo β + nucleotide<br />
 
**[[2bpf]], [[2bpg]] - rDpo β + DNA + nucleotide<br />
**[[2w9m]] – Dpo X – ''Deinococcus radiodurans''<br />
**[[3au2]] – TtDpo β + GTP – ''Thermus thermophilus''<br />
**[[3b0x]], [[3b0y]] – TtDpo β (mutant) + GTP<br />
**[[3au6]], [[3auo]] – TtDpo β + GTP + DNA<br />
**[[2m2t]] – AsfvDpo X – African swine fever virus – NMR<br />
**[[2m2t]] – AsfvDpo X – African swine fever virus – NMR<br />
**[[2m2u]], [[2m2v]] – AsfvDpo X + nucleotide – NMR<br />
**[[2m2u]], [[2m2v]] – AsfvDpo X + nucleotide – NMR<br />
**[[2m2w]] – AsfvDpo X + nucleotide + DNA – NMR<br />
**[[2m2w]] – AsfvDpo X + nucleotide + DNA – NMR<br />
**[[2w9m]] – Dpo X – ''Deinococcus radiodurans''<br />


*''Terminal deoxynucleotidyl transferase''
*DNA polymerase from yeast
 
**[[3oiq]] - yDpo α + cell division control protein 13 <br />
**[[3flo]], [[3lgb]] - yDpo α  subunits A,B<br />
**[[4b08]], [[4fvm]] - yDpo α  subunit A<br />
**[[4fxd]], [[4fyd]] - yDpo α  subunit A + RNA + DNA<br />
**[[3iay]] - yDpo δ catalytic subunit + DNA<br />
**[[3oha]], [[3ohb]], [[3mfh]] - yDpo ε (mutant) + DNA<br />
**[[3mfi]], [[4m8o]] - yDpo ε (mutant) + DNA + nucleotide <br />
**[[2r8j]], [[2r8k]], [[4ptf]] - yDpo ε catalytic domain + DNA + nucleotide <br />
**[[2xgp]], [[2xgq]], [[2wtf]] - yDpo ε + DNA<br />
**[[1jih]] – yDpo η catalytic domain<br />
**[[3bjy]], [[2aq4]] – yRev1 catalytic domain + DNA + nucleotide<br />
 
*DNA polymerase Rev1
 
**[[3gqc ]]– hRev1 + DNA + nucleotide<br />
**[[2ebw]] – hRev1 BRCT domain – NMR<br />
**[[3bjy]], [[2aq4]] – yRev1 catalytic domain + DNA + nucleotide<br />
**[[2lsi]] - hDpo κ peptide + hRev1<br />
**[[4fjo]], [[4gk5]] - hDpo κ + hDpo  ζ  catalytic subunit + Rev1 + MAD2B<br />
**[[2lsj]], [[2lsi]] - hDpo η + Rev1<br />
**[[2lsk]] - mDpo κ + Rev1<br />
 
Terminal deoxynucleotidyl transferase


**[[2coe]] – TdT BRCT domain – NMR<br />
**[[2coe]] – TdT BRCT domain – NMR<br />
**[[1jms]] – mTdT catalytic domain + Mg <br / >
**[[1jms]] – mTdT catalytic domain + Mg <br / >


*''Terminal deoxynucleotidyl transferase binary complex''
Terminal deoxynucleotidyl transferase binary complex


**[[4iqt]], [[4iqu]], [[4iqv]], [[4iqw]] – mTdT catalytic domain + inhibitor <br / >
**[[4iqt]], [[4iqu]], [[4iqv]], [[4iqw]] – mTdT catalytic domain + inhibitor <br / >
Line 219: Line 354:
**[[4i2a]] – mTdT catalytic domain + UMP derivative + Mg <br / >
**[[4i2a]] – mTdT catalytic domain + UMP derivative + Mg <br / >


*''Terminal deoxynucleotidyl transferase ternary complex with DNA''
Terminal deoxynucleotidyl transferase ternary complex with DNA


**[[4i2e]] – mTdT catalytic domain + AMPCPP + Co + DNA <br / >
**[[4i2e]] – mTdT catalytic domain + AMPCPP + Co + DNA <br / >
Line 227: Line 362:
**[[4i28]], [[4i2f]] – mTdT catalytic domain + Mg + Zn + DNA<br / >
**[[4i28]], [[4i2f]] – mTdT catalytic domain + Mg + Zn + DNA<br / >
**[[4i2g]] – mTdT catalytic domain + Mg + Co + DNA<br / >
**[[4i2g]] – mTdT catalytic domain + Mg + Co + DNA<br / >
*Family Y
**[[2i5o]] - hDpo η ubiquitin-binding zinc finger - NMR<br />
**[[3si8]] - hDpo η +  DNA<br />
**[[3abd]], [[3abe]] - hDpo ξ catalytic subunit Rev3 + mitotic spindle assembly checkpoint protein Rev7<br />
**[[3gqc]] – hRev1 + DNA + nucleotide<br />
**[[2ebw]] – hRev1 BRCT domain – NMR<br />
**[[3bjy]], [[2aq4]] – yRev1 catalytic domain + DNA + nucleotide<br />
**[[3q8r]], [[3q8s]], [[3h4b]], [[3h4d]], [[3gv5]], [[3gv7]], [[3gv8]], [[3epg]], [[3epi]], [[2fll]], [[2fln]], [[2flp]], [[2dpi]], [[2dpj]], [[2alz]], [[1zet]], [[1t3n]], [[4ebc]], [[4ebd]], [[4ebe]], [[4fs1]], [[4fs2]], [[4eyh]], [[4eyi]] - hDpo τ + DNA + nucleotide<br />
**[[3ngd]], [[3osn]], [[3h40]] - hDpo τ catalytic fragment + DNA<br />
**[[2ktf]] - hDpo τ + ubiquitin<br />
**[[2l0f]], [[2l0g]] - hDpo τ + ubiquitin – NMR<br />
**[[2khu]] - hDpo ι ubiquitin binding motif – NMR<br />
**[[2khw]] - hDpo ι ubiquitin binding motif + ubiquitin – NMR<br />
**[[3g6v]], [[3g6x]], [[3g6y]] - hDpo ι +  DNA<br />
**[[1t94]] - hDpo κ<br />
**[[3in5]] - hDpo κ + DNA<br />
**[[2w7o]], [[2w7p]], [[2oh2]], [[3pzp]] - hDpo κ + DNA + nucleotide<br />
**[[2lsi]] - hDpo κ peptide + hREV1<br />
**[[4fjo]] - hDpo κ + DNA repair protein REV1 + MAD2B<br />
**[[4gk0]], [[4gk5]], [[3vu7]], [[4ext]] - hDpo η + DNA repair protein REV1 + MAD2B<br />
**[[2lsj]], [[2isi]] - hDpo η + DNA repair protein REV1<br />
**[[4ecq]], [[4ecr]], [[4ecs]], [[4ect]], [[4ecu]], [[4ecv]], [[4ecw]], [[4ecx]], [[4ecy]], [[4ecz]], [[4ed0]], [[4ed1]], [[4ed2]], [[4ed3]], [[4ed6]], [[4ed7]], [[4ed8]], [[4o3n]], [[4o3o]], [[4o3p]], [[4o3q]], [[4o3r]], [[4o3s]], [[4q8e]], [[4q8f]], [[4rnm]], [[4rnn]], [[4rno]], [[4x0p]], [[4x0q]] - hDpo η + DNA + nucleotide<br />
**[[5aga]] - hDpo η + nucleotide<br />
**[[2kwu]], [[2kwv]] - mDpo τ C-terminal + ubiquitin - NMR<br />
**[[3ai4]] - mDpo τ/yEGFP<br />
**[[1jih]] – yDpo η catalytic domain<br />
**[[2lsk]] - mDpo κ + DNA repair protein REV1<br />
*Prokaryotic Pol I – DNA repair
**[[1s5j]] – SsDpo I<br />
**[[3eyz]] - GsDpo I (mutant) + DNA <br />
**[[3ez5]] - GsDpo I (mutant) + DNA + nucleotide <br />
**[[3pv8]], [[3px0]], [[3px4]], [[3px6]], [[4dqi]], [[4dqp]], [[4dqq]], [[4dqr]], [[4dqs]], [[4ds4]], [[4ds5]], [[4dse]], [[4dsf]], [[4e0d]], [[4ez6]], [[4ez9]], [[4f2r]], [[4f2s]], [[4f3o]], [[4f4k]], [[4f8r]] - GkDpo I (mutant) + DNA – ''Geobacillus kaustophilus''
*Prokaryotic Pol II – DNA repair
**[[3o59]] - PhDpo II large subunit - ''Pyrococcus horikoshii''<br />
**[[2kxe]] - PhDpo II small subunit<br />
**[[1qqc]] – DeDpo II<br />
*Prokaryotic Pol III
**[[4tr6]] - Pol III β subunit – ''Bacillus subtilis''<br />
**[[3p16]], [[3rb9]], [[4tr7]] - Pol III β subunit – ''Mycobacterrium tuberculosis''<br />
**[[4tr8]] - PaPol III β subunit – ''Pseudomonas aeruginosa''<br />
**[[4tsz]] - PaPol III β subunit + peptide<br />
*Prokaryotic Pol IV
**[[4ir1]], [[4ir9]], [[4irc]], [[4ird]], [[4irk]] - EcPol IV + DNA<br />
**[[4r8u]] - EcPol IV + DNA + nucleotide<br />
**[[2rdi]] - SsPol IV - ''Sulfolobus solfataricus''<br />
**[[3pr4]], [[3pr5]], [[2r8g]], [[2r8h]], [[2r8i]], [[2uvr]], [[2uvu]], [[2uvv]], [[2uvw]],  - SsPol IV (mutant) + DNA + nucleotide<br />
**[[4juz]], [[4jv0]], [[4jv1]], [[4jv2]] - SsPol IV + DNA + nucleotide<br />
**[[2xc9]], [[3m9m]], [[3m9n]], [[3m9o]], [[2v4q]], [[2v4r]], [[2ago]], [[1ryr]], [[1rys]], [[2w9a]], [[2w9b]], [[2w9c]], [[3gii]], [[3gij]], [[3gik]], [[3gil]], [[3gim]], [[3qz7]], [[3qz8]], [[3pvx]], [[3pw0]], [[3pw2]], [[3pw4]], [[3pw5]], [[3pw7]], [[3raq]], [[3rax]], [[3rb0]], [[3rb3]], [[3rb4]], [[3rb6]], [[3rbd]], [[3rbe]], [[4hyk]], [[4fbt]], [[4fbu]], [[4g3i]] - SsPol IV + DNA<br />
**[[2xca]], [[2xcp]], [[3khg]], [[3khh]], [[3khl]], [[3khr]], [[2w8k]], [[2w8l]], [[2rdj]], [[2v9w]], [[2va2]], [[2va3]], [[2ia6]], [[2ibk]], [[2jef]], [[2jeg]], [[2jei]], [[2jej]], [[2imw]], [[2j6s]], [[2j6t]], [[2j6u]], [[2asd]], [[2asj]], [[2asl]], [[2atl]], [[2au0]], [[2c22]], [[2c28]], [[2c2d]], [[2c2e]], [[2c2r]], [[2agp]], [[2agq]], [[2bqr]], [[2bqu]], [[2br0]], [[2bq3]], [[1s9f]], [[1s97]], [[1s0m]], [[1s0n]], [[1s0o]], [[1s10]], [[1n48]], [[1n56]], [[1jx4]], [[1jxl]], [[3t5h]], [[3t5j]], [[3t5k]], [[3t5l]], [[3v6h]], [[3v6j]], [[3v6k]], [[4gc6]], [[4gc7]] - SsPol IV + DNA + nucleotide<br />
**[[3fds]] – SsPol IV + PCNA B + PCNA C<br />
**[[3bq2]], [[3bq0]] – SaPol IV + DNA – ''Sulfolobus acidocaldarius''<br />
**[[3bq1]], [[4f4w]], [[4f4x]], [[4f4y]], [[4f4z]], [[4f50]]  - SaPol IV + DNA + nucleotide<br />
**[[4nlg]] - SaPol IV (mutant) + DNA<br />
**[[4dez]] – Pol IV – ''Mycobacterium smegmatis''
}}
}}


[[Category:Topic Page]]
[[Category:Topic Page]]

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Alexander Berchansky, David Canner, Michal Harel, Joel L. Sussman, Cori Damron, Emily Bray, Jaime Prilusky
Retrieved from "https://proteopedia.openfox.io/w/DNA_polymerase"