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NADP-dependent malic enzyme: Difference between revisions

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== Disease ==
== Disease ==
{{#tree: id=OrganizedByTopic|openlevels=0|
*Item
**sub item
**Another sub-item
}}


== Relevance ==
== Relevance ==
Line 40: Line 34:
== In structures ==
== In structures ==
Lysozyme is found in 595 PDB entries<br>
Lysozyme is found in 595 PDB entries<br>
{{#tree:
<br><b>Eukaryota</b> (16 PDB entries): <br><br><b>Homo sapiens</b> (1 PDB entries): <br>
*<b>Eukaryota<b> 16 PDB entries
[[4uis]] <div class="pdb-prints 4uis"></div><br><br>Title: The cryoEM structure of human gamma-Secretase complex<br>
**<b>Homo sapiens</b> 1 PDB entries
***[[4uis]]Title: The cryoEM structure of human gamma-Secretase complex  
Experimental EM map [http://pdbe.org/emd-2974 emd-2974]. <br>
Experimental EM map [http://pdbe.org/emd-2974 emd-2974]. <br>
4.4 A resolution  
4.4 A resolution <br>
Other macromolecules also in this entry: GAMMA-SECRETASE, Nicastrin, Presenilin-1 NTF subunit, .  
Other macromolecules also in this entry: GAMMA-SECRETASE, Nicastrin, Presenilin-1 NTF subunit, . <br><br>
**<b>Hevea brasiliensis</b> 7 PDB entries
<br/>
***[[1kqy]]Title: Hevamine Mutant D125A/E127A/Y183F in Complex with Penta-NAG  
<br><b>Hevea brasiliensis</b> (7 PDB entries): <br>
1.92 A resolution  
[[1kqy]] <div class="pdb-prints 1kqy"></div><br><br>Title: Hevamine Mutant D125A/E127A/Y183F in Complex with Penta-NAG<br>
 
1.92 A resolution <br>
**<b>Meretrix lusoria</b> 3 PDB entries
<br>
***[[4pj2]]Title: Crystal structure of Aeromonas hydrophila PliI in complex with Meretrix lusoria lysozyme  
[http://www.ebi.ac.uk/pdbe/entry/search/index?organism_scientific:"Hevea brasiliensis"&molecule_name:"Lysozyme"| Search for other PDB entries] <br/>
1.24 A resolution  
<br><b>Meretrix lusoria</b> (3 PDB entries): <br>
Other macromolecules also in this entry: Putative exported protein, .  
[[4pj2]] <div class="pdb-prints 4pj2"></div><br><br>Title: Crystal structure of Aeromonas hydrophila PliI in complex with Meretrix lusoria lysozyme<br>
**<b>Antheraea mylitta</b> 1 PDB entries
1.24 A resolution <br>
***[[1iiz]]Title: Crystal Structure of the Induced Antibacterial Protein from Tasar Silkworm, Antheraea mylitta  
Other macromolecules also in this entry: Putative exported protein, . <br><br>
2.4 A resolution  
[http://www.ebi.ac.uk/pdbe/entry/search/index?organism_scientific:"Meretrix lusoria"&molecule_name:"Lysozyme" Search for other PDB entries] <br/>
 
<br><b>Antheraea mylitta</b> (1 PDB entries): <br>
**<b>Ruditapes philippinarum</b> 1 PDB entries
[[1iiz]] <div class="pdb-prints 1iiz"></div><br><br>Title: Crystal Structure of the Induced Antibacterial Protein from Tasar Silkworm, Antheraea mylitta<br>
***[[2dqa]]Title: Crystal Structure of Tapes japonica Lysozyme  
2.4 A resolution <br>
1.6 A resolution  
<br>
 
<br/>
**<b>Mus musculus</b> 1 PDB entries
<br><b>Ruditapes philippinarum</b> (1 PDB entries): <br>
***[[1iak]]Title: HISTOCOMPATIBILITY ANTIGEN I-AK  
[[2dqa]] <div class="pdb-prints 2dqa"></div><br><br>Title: Crystal Structure of Tapes japonica Lysozyme<br>
1.9 A resolution  
1.6 A resolution <br>
Other macromolecules also in this entry: H-2 class II histocompatibility antigen, A-K beta chain, H-2 class II histocompatibility antigen, A-K alpha chain.  
<br>
**<b>Bombyx mori</b> 2 PDB entries
<br/>
***[[1gd6]]Title: STRUCTURE OF THE BOMBYX MORI LYSOZYME  
<br><b>Mus musculus</b> (1 PDB entries): <br>
2.5 A resolution  
[[1iak]] <div class="pdb-prints 1iak"></div><br><br>Title: HISTOCOMPATIBILITY ANTIGEN I-AK<br>
 
1.9 A resolution <br>
*<b>Viruses<b> 578 PDB entries
Other macromolecules also in this entry: H-2 class II histocompatibility antigen, A-K beta chain, H-2 class II histocompatibility antigen, A-K alpha chain. <br><br>
**<b>Enterobacteria phage P22</b> 2 PDB entries
<br/>
***[[2anv]]Title: crystal structure of P22 lysozyme mutant L86M  
<br><b>Bombyx mori</b> (2 PDB entries): <br>
1.04 A resolution  
[[1gd6]] <div class="pdb-prints 1gd6"></div><br><br>Title: STRUCTURE OF THE BOMBYX MORI LYSOZYME<br>
 
2.5 A resolution <br>
**<b>Enterobacteria phage P21</b> 2 PDB entries
<br>
***[[3hdf]]Title: Crystal structure of truncated endolysin R21 from phage 21  
[http://www.ebi.ac.uk/pdbe/entry/search/index?organism_scientific:"Bombyx mori"&molecule_name:"Lysozyme" Search for other PDB entries] <br/>
1.7 A resolution  
<br><b>Viruses</b> (578 PDB entries): <br><br><b>Enterobacteria phage P22</b> (2 PDB entries): <br>
 
[[2anv]] <div class="pdb-prints 2anv"></div><br><br>Title: crystal structure of P22 lysozyme mutant L86M<br>
**<b>Enterobacteria phage T4</b> 561 PDB entries
1.04 A resolution <br>
***[[1swy]]Title: Use of a Halide Binding Site to Bypass the 1000-atom Limit to Ab initio Structure Determination  
<br>
1.06 A resolution  
[http://www.ebi.ac.uk/pdbe/entry/search/index?organism_scientific:"Enterobacteria phage P22"&molecule_name:"Lysozyme" Search for other PDB entries] <br/>
 
<br><b>Enterobacteria phage P21</b> (2 PDB entries): <br>
**<b>Escherichia phage T5</b> 1 PDB entries
[[3hdf]] <div class="pdb-prints 3hdf"></div><br><br>Title: Crystal structure of truncated endolysin R21 from phage 21<br>
***[[2mxz]]Title: Bacteriophage T5 l-alanoyl-d-glutamate peptidase comlpex with Zn2+ (Endo T5-ZN2+)  
1.7 A resolution <br>
N/A A resolution  
<br>
 
[http://www.ebi.ac.uk/pdbe/entry/search/index?organism_scientific:"Enterobacteria phage P21"&molecule_name:"Lysozyme" Search for other PDB entries] <br/>
**<b>Enterobacteria phage lambda</b> 3 PDB entries
<br><b>Enterobacteria phage T4</b> (561 PDB entries): <br>
***[[1am7]]Title: Lysozyme from bacteriophage lambda  
[[1swy]] <div class="pdb-prints 1swy"></div><br><br>Title: Use of a Halide Binding Site to Bypass the 1000-atom Limit to Ab initio Structure Determination<br>
2.3 A resolution  
1.06 A resolution <br>
 
<br>
**<b>Streptococcus phage CP-7</b> 1 PDB entries
[http://www.ebi.ac.uk/pdbe/entry/search/index?organism_scientific:"Enterobacteria phage T4"&molecule_name:"Lysozyme" Search for other PDB entries] <br/>
***[[4cvd]]Title: Crystal structure of the central repeat of cell wall binding module of Cpl7  
<br><b>Escherichia phage T5</b> (1 PDB entries): <br>
1.666 A resolution  
[[2mxz]] <div class="pdb-prints 2mxz"></div><br><br>Title: Bacteriophage T5 l-alanoyl-d-glutamate peptidase comlpex with Zn2+ (Endo T5-ZN2+)<br>
 
N/A A resolution <br>
**<b>Enterobacteria phage P1</b> 2 PDB entries
<br>
***[[1xju]]Title: Crystal structure of secreted inactive form of P1 phage endolysin Lyz  
<br/>
1.07 A resolution  
<br><b>Enterobacteria phage lambda</b> (3 PDB entries): <br>
 
[[1am7]] <div class="pdb-prints 1am7"></div><br><br>Title: Lysozyme from bacteriophage lambda<br>
**<b>Streptococcus phage Cp-1</b> 6 PDB entries
2.3 A resolution <br>
***[[2j8g]]Title: Crystal structure of the modular Cpl-1 endolysin complexed with a peptidoglycan analogue (E94Q mutant in complex with a tetrasaccharide- pentapeptide)  
<br>
1.69 A resolution  
[http://www.ebi.ac.uk/pdbe/entry/search/index?organism_scientific:"Enterobacteria phage lambda"&molecule_name:"Lysozyme" Search for other PDB entries] <br/>
 
<br><b>Streptococcus phage CP-7</b> (1 PDB entries): <br>
*<b>Bacteria<b> 1 PDB entries
[[4cvd]] <div class="pdb-prints 4cvd"></div><br><br>Title: Crystal structure of the central repeat of cell wall binding module of Cpl7<br>
**<b>Enterobacteria phage T4</b> 1 PDB entries
1.666 A resolution <br>
***[[2qb0]]Title: Structure of the 2TEL crystallization module fused to T4 lysozyme with an Ala-Gly-Pro linker.  
<br>
2.56 A resolution  
<br/>
Other macromolecules also in this entry: Transcription factor ETV6, .  
<br><b>Enterobacteria phage P1</b> (2 PDB entries): <br>
**<b>Escherichia coli</b> 1 PDB entries
[[1xju]] <div class="pdb-prints 1xju"></div><br><br>Title: Crystal structure of secreted inactive form of P1 phage endolysin Lyz<br>
***[[2qb0]]Title: Structure of the 2TEL crystallization module fused to T4 lysozyme with an Ala-Gly-Pro linker.  
1.07 A resolution <br>
2.56 A resolution  
<br>
Other macromolecules also in this entry: Transcription factor ETV6, .  
[http://www.ebi.ac.uk/pdbe/entry/search/index?organism_scientific:"Enterobacteria phage P1"&molecule_name:"Lysozyme" Search for other PDB entries] <br/>
}}
<br><b>Streptococcus phage Cp-1</b> (6 PDB entries): <br>
[[2j8g]] <div class="pdb-prints 2j8g"></div><br><br>Title: Crystal structure of the modular Cpl-1 endolysin complexed with a peptidoglycan analogue (E94Q mutant in complex with a tetrasaccharide- pentapeptide)<br>
1.69 A resolution <br>
<br>
[http://www.ebi.ac.uk/pdbe/entry/search/index?organism_scientific:"Streptococcus phage Cp-1"&molecule_name:"Lysozyme" Search for other PDB entries] <br/>
<br><b>Bacteria</b> (1 PDB entries): <br><br><b>Enterobacteria phage T4</b> (1 PDB entries): <br>
[[2qb0]] <div class="pdb-prints 2qb0"></div><br><br>Title: Structure of the 2TEL crystallization module fused to T4 lysozyme with an Ala-Gly-Pro linker.<br>
2.56 A resolution <br>
Other macromolecules also in this entry: Transcription factor ETV6, . <br><br>
<br/>
<br><b>Escherichia coli</b> (1 PDB entries): <br>
[[2qb0]] <div class="pdb-prints 2qb0"></div><br><br>Title: Structure of the 2TEL crystallization module fused to T4 lysozyme with an Ala-Gly-Pro linker.<br>
2.56 A resolution <br>
Other macromolecules also in this entry: Transcription factor ETV6, . <br><br>
<br/>

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PDBe, Jaime Prilusky, Michal Harel
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