4s1r: Difference between revisions

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-'''Unreleased structure'''
+==Crystal structure of a VRC01-lineage antibody, 45-VRC01.H08.F-117225, in complex with clade A/E HIV-1 gp120 core==
+<StructureSection load='4s1r' size='340' side='right' caption='[[4s1r]], [[Resolution|resolution]] 3.21&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[4s1r]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4S1R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4S1R FirstGlance]. <br>
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
+<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4s1q|4s1q]], [[4s1s|4s1s]]</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4s1r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4s1r OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4s1r RCSB], [http://www.ebi.ac.uk/pdbsum/4s1r PDBsum]</span></td></tr>
+</table>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+HIV-1-neutralizing antibodies develop in most HIV-1-infected individuals, although highly effective antibodies are generally observed only after years of chronic infection. Here, we characterize the rate of maturation and extent of diversity for the lineage that produced the broadly neutralizing antibody VRC01 through longitudinal sampling of peripheral B cell transcripts over 15 years and co-crystal structures of lineage members. Next-generation sequencing identified VRC01-lineage transcripts, which encompassed diverse antibodies organized into distinct phylogenetic clades. Prevalent clades maintained characteristic features of antigen recognition, though each evolved binding loops and disulfides that formed distinct recognition surfaces. Over the course of the study period, VRC01-lineage clades showed continuous evolution, with rates of approximately 2 substitutions per 100 nucleotides per year, comparable to that of HIV-1 evolution. This high rate of antibody evolution provides a mechanism by which antibody lineages can achieve extraordinary diversity and, over years of chronic infection, develop effective HIV-1 neutralization.
-The entry 4s1r is ON HOLD  until Paper Publication
+Maturation and Diversity of the VRC01-Antibody Lineage over 15 Years of Chronic HIV-1 Infection.,Wu X, Zhang Z, Schramm CA, Joyce MG, Do Kwon Y, Zhou T, Sheng Z, Zhang B, O'Dell S, McKee K, Georgiev IS, Chuang GY, Longo NS, Lynch RM, Saunders KO, Soto C, Srivatsan S, Yang Y, Bailer RT, Louder MK, Mullikin JC, Connors M, Kwong PD, Mascola JR, Shapiro L Cell. 2015 Apr 8. pii: S0092-8674(15)00257-3. doi: 10.1016/j.cell.2015.03.004. PMID:25865483<ref>PMID:25865483</ref>
-Authors: Kwon, Y.D., Yang, Y., Zhang, B., Kwong, P.D.
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
-Description: Crystal structure of a VRC01-lineage antibody, 45-VRC01.H08.F-117225, in complex with Clade A/E HIV-1 gp120 core
+== References ==
-[[Category: Unreleased Structures]]
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Kwon, Y D]]
+[[Category: Kwong, P D]]
+[[Category: Yang, Y]]
 [[Category: Zhang, B]]
-[[Category: Yang, Y]]
+[[Category: Antibody maturation]]
-[[Category: Kwon, Y.D]]
+[[Category: Evolutionary rate]]
-[[Category: Kwong, P.D]]
+[[Category: Hiv-1]]
+[[Category: Neutralizing antibody]]
+[[Category: Viral protein-immune system-inhibitor complex]]
+[[Category: Vrc01-lineage]]