DNA polymerase: Difference between revisions

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**[[3py8]] - TaDpo I klenow fragment (mutant) + DNA<br />
**[[3py8]] - TaDpo I klenow fragment (mutant) + DNA<br />
**[[3m8r]], [[3m8s]], [[3lwl]], [[3lwm]], [[1qss]], [[1qsy]], [[1qtm]], [[2ktq]], [[3ktq]], [[4ktq]], [[3rr7]], [[3rr8]], [[3rrg]], [[3rrh]], [[3t3f]], [[4df4]], [[4df8]], [[4dfj]], [[4dfk]], [[4dfm]], [[4dfp]]- TaDpo I klenow fragment + DNA + nucleotide<br />
**[[3m8r]], [[3m8s]], [[3lwl]], [[3lwm]], [[1qss]], [[1qsy]], [[1qtm]], [[2ktq]], [[3ktq]], [[4ktq]], [[3rr7]], [[3rr8]], [[3rrg]], [[3rrh]], [[3t3f]], [[4df4]], [[4df8]], [[4dfj]], [[4dfk]], [[4dfm]], [[4dfp]]- TaDpo I klenow fragment + DNA + nucleotide<br />
**[[4n56]], [[4n5s]], [[4xiu]] - TaDpo I klenow fragment (mutant) + DNA + nucleotide<br />
**[[1xwl]] - GsDpo I fragment  - ''Geobacillus stearothermophilus''<br />
**[[1xwl]] - GsDpo I fragment  - ''Geobacillus stearothermophilus''<br />
**[[2xo7]], [[3hp6]], [[3hpo]], [[2hhq]], [[2hhs]], [[2hht]], [[2hhu]], [[2hhv]], [[2hhw]], [[2hhx]], [[2hvh]], [[2hvi]], [[2hw3]], [[1xc9]], [[1ua0]], [[1ua1]], [[1njw]], [[1njx]], [[1njy]], [[1njz]], [[1nk0]], [[1nk4]], [[1nk5]], [[1nk6]], [[1nk7]], [[1nk8]], [[1nk9]], [[1nkb]], [[1nkc]], [[1nke]], [[1l3s]], [[2bdp]], [[4bdp]], [[2xy5]], [[2xy6]], [[2xy7]], [[2y1i]], [[2y1j]], [[3tan]], [[3tap]], [[3taq]], [[3tar]], [[3thv]], [[4b9l]], [[4b9m]], [[4b9n]], [[4b9s]], [[4b9t]], [[4b9u]], [[4b9v]] - GsDpo I fragment + DNA<br />  
**[[2xo7]], [[3hp6]], [[3hpo]], [[2hhq]], [[2hhs]], [[2hht]], [[2hhu]], [[2hhv]], [[2hhw]], [[2hhx]], [[2hvh]], [[2hvi]], [[2hw3]], [[1xc9]], [[1ua0]], [[1ua1]], [[1njw]], [[1njx]], [[1njy]], [[1njz]], [[1nk0]], [[1nk4]], [[1nk5]], [[1nk6]], [[1nk7]], [[1nk8]], [[1nk9]], [[1nkb]], [[1nkc]], [[1nke]], [[1l3s]], [[2bdp]], [[4bdp]], [[2xy5]], [[2xy6]], [[2xy7]], [[2y1i]], [[2y1j]], [[3tan]], [[3tap]], [[3taq]], [[3tar]], [[3thv]], [[4b9l]], [[4b9m]], [[4b9n]], [[4b9s]], [[4b9t]], [[4b9u]], [[4b9v]] - GsDpo I fragment + DNA<br />  
**[[4dsi]], [[4dsj]], [[4dsk]], [[4dsl]], [[4dwi]] - GsDpo I fragment (mutant) + DNA<br />
**[[4dsi]], [[4dsj]], [[4dsk]], [[4dsl]], [[4dwi]] - GsDpo I fragment (mutant) + DNA<br />
**[[3ht3]], [[1u45]], [[1u47]], [[1u48]], [[1u49]], [[1u4b]], [[1l3t]], [[1l3u]], [[1l3v]], [[1l5u]], [[1lv5]], [[3bdp]] - GsDpo I fragment + DNA + nucleotide<br />
**[[3ht3]], [[1u45]], [[1u47]], [[1u48]], [[1u49]], [[1u4b]], [[1l3t]], [[1l3u]], [[1l3v]], [[1l5u]], [[1lv5]], [[3bdp]], [[3ti0]], [[4o0i]], [[4uqg]] - GsDpo I fragment + DNA + nucleotide<br />
**[[3ti0]] - GsDpo I fragment + DNA + nucleotide - ''Bacillus''<br />
**[[3ti0]] - GsDpo I fragment + DNA + nucleotide - ''Bacillus''<br />
**[[3ikm]] - hDpo γ1+γ2 - human<br />
**[[3ikm]] - hDpo γ1+γ2 - human<br />
**[[3ikl]], [[2g4c]] - hDpo γ2<br />
**[[3ikl]], [[2g4c]] - hDpo γ2<br />
**[[4xvi]], [[4xvk]], [[4xvl]], [[4xvm]] – hDpo nu + DNA<br />
**[[4p4m]], [[4p4o]], [[4p4p]] - Dpo β + DNA + nucleotide – ''Leishmania infantum''<br />


*Family B – 3’-5’ exonuclease activity (includes eukaryotic α,δ,ε)
*Family B – 3’-5’ exonuclease activity (includes eukaryotic α,δ,ε)
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**[[4e2i]] – hDpo α subunit β + large T antigen<br />
**[[4e2i]] – hDpo α subunit β + large T antigen<br />
**[[4bpx]] - hDpo α catalytic subunit + DNA primase small subunit <br />
**[[4bpx]] - hDpo α catalytic subunit + DNA primase small subunit <br />
**[[4q5v]] - hDpo α catalytic subunit + DNA + RNA + aphidicolin <br />
**[[4qcl]] - hDpo α catalytic subunit + DNA + RNA + nucleotide <br />
**[[2keb]] - hDpo αB - NMR <br />
**[[2keb]] - hDpo αB - NMR <br />
**[[1n5g]], [[1k0p]], [[1k18]] - hDpo α zinc finger domain- NMR<br />
**[[1n5g]], [[1k0p]], [[1k18]] - hDpo α zinc finger domain- NMR<br />
**[[1zqj]], [[4lvs]], [[4m2y]], [[4m47]], [[4nlk]], [[4nln]], [[4nlz]], [[4nm1]], [[4nm2]], [[4tup]], [[4tuq]], [[4tur]], [[4tus]] – hDpo β + DNA<br />
**[[4m9g]], [[4m9h]], [[4m9j]], [[4m9l]], [[4m9n]], [[4r63]], [[4r64]], [[4r65]], [[4r66]] – hDpo β (mutant) + DNA<br />
**[[3rje]], [[3rjf]], [[3rjg]], [[3rjh]], [[3rji]], [[3rjj]], [[3rjk]], [[3tfr]], [[3tfs]], [[4mf2]], [[4mf8]], [[4mfa]], [[4mfc]], [[4mff]], [[4nxz]], [[4ny8]], [[4o5c]], [[4o5e]], [[4o5k]], [[4o9m]], [[4p2h]], [[4pgq]], [[4pgx]], [[4pha]], [[4phd]], [[4uaw]], [[4uay]], [[4uaz]], [[4ub1]], [[4ub2]], [[4ub3]], [[4ub4]], [[4ub5]], [[4ubb]], [[4ubc]] - hDpo β + nucleotide + DNA<br />
**[[4ppx]] - hDpo β + spiroiminohydantoin + DNA<br />
**[[3e0j]] - hDpo δ2+δ3<br />
**[[3e0j]] - hDpo δ2+δ3<br />
**[[3mr4]], [[3mr2]], [[3mr3]], [[3mr5]], [[3mr6]] - hDpo ε catalytic core + DNA + nucleotide<br />
**[[3mr4]], [[3mr2]], [[3mr3]], [[3mr5]], [[3mr6]] - hDpo ε catalytic core + DNA + nucleotide<br />
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**[[3oha]], [[3ohb]], [[3mfh]] - yDpo ε (mutant) + DNA<br />
**[[3oha]], [[3ohb]], [[3mfh]] - yDpo ε (mutant) + DNA<br />
**[[3mfi]], [[4m8o]] - yDpo ε (mutant) + DNA + nucleotide <br />
**[[3mfi]], [[4m8o]] - yDpo ε (mutant) + DNA + nucleotide <br />
**[[2r8j]], [[2r8k]] - yDpo ε catalytic domain + DNA + nucleotide <br />
**[[2r8j]], [[2r8k]], [[4ptf]] - yDpo ε catalytic domain + DNA + nucleotide <br />
**[[2xgp]], [[2xgq]], [[2wtf]] - yDpo ε + DNA<br />
**[[2xgp]], [[2xgq]], [[2wtf]] - yDpo ε + DNA<br />
**[[3maq]], [[3k57]], [[3k58]], [[3k59]], [[3k5l]], [[3k5m]] - EcDpo II (mutant) + DNA + nucleotide<br />  
**[[3maq]], [[3k57]], [[3k58]], [[3k59]], [[3k5l]], [[3k5m]] - EcDpo II (mutant) + DNA + nucleotide<br />  
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**[[1zd7]], [[1zde]], [[3nzm]] - SyDpo III α subunit – Synechocystis<br />
**[[1zd7]], [[1zde]], [[3nzm]] - SyDpo III α subunit – Synechocystis<br />
**[[4gig]] - SyDpo III α subunit (mutant) <br />
**[[4gig]] - SyDpo III α subunit (mutant) <br />
**[[2keq]], [[4kl5]], [[4kl6]] - Dpo III α subunit – ''Nostoc punctiforme''<br />
**[[2keq]], [[4kl5]], [[4kl6]] - NpDpo III α subunit – ''Nostoc punctiforme''<br />
**[[4lx3]] - NpDpo III α subunit + nucleic acid binding tRNA/helicase<br />
**[[1ok7]] - EcDpo III + EcDpo IV C-terminal<br />
**[[1ok7]] - EcDpo III + EcDpo IV C-terminal<br />
**[[1mmi]], [[2pol]], [[4k3s]] - EcDpo III subunit β<br />
**[[1mmi]], [[2pol]], [[4k3s]], [[4pnv]], [[4pnw]] - EcDpo III subunit β<br />
**[[2xur]], [[3f1v]], [[3pwe]] - EcDpo III subunit β (mutant)<br />
**[[2xur]], [[3f1v]], [[3pwe]] - EcDpo III subunit β (mutant)<br />
**[[3d1e]] - EcDpo III subunit β + EcDpo II C-terminal<br />
**[[3d1e]] - EcDpo III subunit β + EcDpo II C-terminal<br />
**[[1unn]] - EcDpo III subunit β + EcDpo IV little finger<br />
**[[1unn]] - EcDpo III subunit β + EcDpo IV little finger<br />
**[[3d1g]], [[3qsb]], [[4k3k]], [[4k3l]], [[4mjp]], [[4mjq]], [[4mjr]], [[4n94]], [[4n95]], [[4n96]], [[4n97]], [[4n98]], [[4n99]], [[4n9a]] - EcDpo III subunit β + inhibitor<br />
**[[3d1g]], [[3qsb]], [[4k3k]], [[4k3l]], [[4mjp]], [[4mjq]], [[4mjr]], [[4n94]], [[4n95]], [[4n96]], [[4n97]], [[4n98]], [[4n99]], [[4n9a]], [[4ovf]], [[4ovg]], [[4ovh]], [[4pnu]] - EcDpo III subunit β + inhibitor<br />
**[[3bep]] - EcDpo III subunit β + DNA<br />
**[[3bep]] - EcDpo III subunit β + DNA<br />
**[[3d1f]], [[4k3m]], [[4k3o]], [[4k3p]], [[4k3q]], [[4k3r]], [[4k74]] - EcDpo III β subunit + polypeptide<br />
**[[3d1f]], [[4k3m]], [[4k3o]], [[4k3p]], [[4k3q]], [[4k3r]], [[4k74]] - EcDpo III β subunit + polypeptide<br />
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**[[2p1j]] – TmDpo III exonuclease domain – ''Thermotoga maritima''<br />
**[[2p1j]] – TmDpo III exonuclease domain – ''Thermotoga maritima''<br />
**[[1vpk]] - TmDpo III β subunit<br />
**[[1vpk]] - TmDpo III β subunit<br />
**[[3p16]], [[3rb9]] - Dpo III β subunit – ''Mycobacterrium tuberculosis''<br />
**[[3q4j]], [[3q4k]], [[3q4l]], [[3d1f]] - EcDpo III β subunit + peptide<br />
**[[3q4j]], [[3q4k]], [[3q4l]], [[3d1f]] - EcDpo III β subunit + peptide<br />
**[[1njf]], [[1njg]] - EcDpo III subunit γ N-terminal domains 1-2<br />
**[[1njf]], [[1njg]] - EcDpo III subunit γ N-terminal domains 1-2<br />
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**[[3mgh]], [[3c5f]], [[3c5g]], [[2pfn]] - hDpo λ (mutant) + DNA<br />
**[[3mgh]], [[3c5f]], [[3c5g]], [[2pfn]] - hDpo λ (mutant) + DNA<br />
**[[3pml]], [[3mdc]], [[1xsn]] - hDpo λ + DNA + nucleotide<br />
**[[3pml]], [[3mdc]], [[1xsn]] - hDpo λ + DNA + nucleotide<br />
**[[4k4g]], [[3k4h]], [[3k4i]] - hDpo λ + DNA + nucleotide analog<br />
**[[4k4g]], [[4k4h]], [[4k4i]] - hDpo λ + DNA + nucleotide analog<br />
**[[3mgi]], [[3hw8]], [[3hwt]], [[3hx0]], [[2pfo]], [[2pfp]], [[2pfq]] - hDpo λ (mutant) + DNA + nucleotide<br />
**[[3mgi]], [[3hw8]], [[3hwt]], [[3hx0]], [[2pfo]], [[2pfp]], [[2pfq]] - hDpo λ (mutant) + DNA + nucleotide<br />
**[[3upq]], [[3uq0]], [[3uq2]] - hDpo δ (mutant) + DNA<br />
**[[3upq]], [[3uq0]], [[3uq2]] - hDpo δ (mutant) + DNA<br />
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**[[3b0x]], [[3b0y]] – TtDpo β (mutant) + GTP<br />
**[[3b0x]], [[3b0y]] – TtDpo β (mutant) + GTP<br />
**[[3au6]], [[3auo]] – TtDpo β + GTP + DNA<br />
**[[3au6]], [[3auo]] – TtDpo β + GTP + DNA<br />
**[[2m2t]] – AsfvDpo X – African swine fever virus – NMR<br />
**[[2m2u]], [[2m2v]] – AsfvDpo X + nucleotide – NMR<br />
**[[2m2w]] – AsfvDpo X + nucleotide + DNA – NMR<br />


*''Terminal deoxynucleotidyl transferase''
*''Terminal deoxynucleotidyl transferase''
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**[[3in5]] - hDpo κ + DNA<br />
**[[3in5]] - hDpo κ + DNA<br />
**[[2w7o]], [[2w7p]], [[2oh2]], [[3pzp]] - hDpo κ + DNA + nucleotide<br />
**[[2w7o]], [[2w7p]], [[2oh2]], [[3pzp]] - hDpo κ + DNA + nucleotide<br />
**[[2lsi]] - hDpo κ peptide + hREV1<br />
**[[4fjo]] - hDpo κ + DNA repair protein REV1 + MAD2B<br />
**[[4fjo]] - hDpo κ + DNA repair protein REV1 + MAD2B<br />
**[[4gk0]], [[4gk5]] - hDpo η + DNA repair protein REV1 + MAD2B<br />
**[[4gk0]], [[4gk5]], [[3vu7]], [[4ext]] - hDpo η + DNA repair protein REV1 + MAD2B<br />
**[[2lsj]], [[2isi]] - hDpo η + DNA repair protein REV1<br />
**[[2lsj]], [[2isi]] - hDpo η + DNA repair protein REV1<br />
**[[4ecq]], [[4ecr]], [[4ecs]], [[4ect]], [[4ecu]], [[4ecv]], [[4ecw]], [[4ecx]], [[4ecy]], [[4ecz]], [[4ed0]], [[4ed1]], [[4ed2]], [[4ed3]], [[4ed6]], [[4ed7]], [[4ed8]] - hDpo η + DNA + nucleotide<br />
**[[4ecq]], [[4ecr]], [[4ecs]], [[4ect]], [[4ecu]], [[4ecv]], [[4ecw]], [[4ecx]], [[4ecy]], [[4ecz]], [[4ed0]], [[4ed1]], [[4ed2]], [[4ed3]], [[4ed6]], [[4ed7]], [[4ed8]], [[4o3n]], [[4o3o]], [[4o3p]], [[4o3q]], [[4o3r]], [[4o3s]], [[4q8e]], [[4q8f]], [[4rnm]], [[4rnn]], [[4rno]], [[4x0p]], [[4x0q]] - hDpo η + DNA + nucleotide<br />
**[[5aga]] - hDpo η + nucleotide<br />
**[[2kwu]], [[2kwv]] - mDpo τ C-terminal + ubiquitin - NMR<br />
**[[2kwu]], [[2kwv]] - mDpo τ C-terminal + ubiquitin - NMR<br />
**[[3ai4]] - mDpo τ/yEGFP<br />
**[[3ai4]] - mDpo τ/yEGFP<br />
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**[[2kxe]] - PhDpo II small subunit<br />
**[[2kxe]] - PhDpo II small subunit<br />
**[[1qqc]] – DeDpo II<br />
**[[1qqc]] – DeDpo II<br />
*Prokaryotic Pol III
**[[4tr6]] - Pol III β subunit – ''Bacillus subtilis''<br />
**[[3p16[[, [[3rb9]], [[4tr7]] - Pol III β subunit – ''Mycobacterrium tuberculosis''<br />
**[[4tr8]] - PaPol III β subunit – ''Pseudomonas aeruginosa''<br />
**[[4tsz]] - PaPol III β subunit + peptide<br />


*Prokaryotic Pol IV
*Prokaryotic Pol IV


**[[4ir1]], [[4ir9]], [[4irc]], [[4ird]], [[4irk]] - EcDpo IV + DNA<br />  
**[[4ir1]], [[4ir9]], [[4irc]], [[4ird]], [[4irk]] - EcPol IV + DNA<br />  
**[[4r8u]] - EcPol IV + DNA + nucleotide<br />
**[[2rdi]] - SsPol IV - ''Sulfolobus solfataricus''<br />
**[[3pr4]], [[3pr5]], [[2r8g]], [[2r8h]], [[2r8i]], [[2uvr]], [[2uvu]], [[2uvv]], [[2uvw]],  - SsPol IV (mutant) + DNA + nucleotide<br />
**[[4juz]], [[4jv0]], [[4jv1]], [[4jv2]] - SsPol IV + DNA + nucleotide<br />
**[[2xc9]], [[3m9m]], [[3m9n]], [[3m9o]], [[2v4q]], [[2v4r]], [[2ago]], [[1ryr]], [[1rys]], [[2w9a]], [[2w9b]], [[2w9c]], [[3gii]], [[3gij]], [[3gik]], [[3gil]], [[3gim]], [[3qz7]], [[3qz8]], [[3pvx]], [[3pw0]], [[3pw2]], [[3pw4]], [[3pw5]], [[3pw7]], [[3raq]], [[3rax]], [[3rb0]], [[3rb3]], [[3rb4]], [[3rb6]], [[3rbd]], [[3rbe]], [[4hyk]], [[4fbt]], [[4fbu]], [[4g3i]] - SsPol IV + DNA<br />
**[[2xca]], [[2xcp]], [[3khg]], [[3khh]], [[3khl]], [[3khr]], [[2w8k]], [[2w8l]], [[2rdj]], [[2v9w]], [[2va2]], [[2va3]], [[2ia6]], [[2ibk]], [[2jef]], [[2jeg]], [[2jei]], [[2jej]], [[2imw]], [[2j6s]], [[2j6t]], [[2j6u]], [[2asd]], [[2asj]], [[2asl]], [[2atl]], [[2au0]], [[2c22]], [[2c28]], [[2c2d]], [[2c2e]], [[2c2r]], [[2agp]], [[2agq]], [[2bqr]], [[2bqu]], [[2br0]], [[2bq3]], [[1s9f]], [[1s97]], [[1s0m]], [[1s0n]], [[1s0o]], [[1s10]], [[1n48]], [[1n56]], [[1jx4]], [[1jxl]], [[3t5h]], [[3t5j]], [[3t5k]], [[3t5l]], [[3v6h]], [[3v6j]], [[3v6k]], [[4gc6]], [[4gc7]] - SsPol IV + DNA + nucleotide<br />
**[[3fds]] – SsPol IV + PCNA B + PCNA C<br />
**[[3bq2]], [[3bq0]] – SaPol IV + DNA – ''Sulfolobus acidocaldarius''<br />
**[[3bq1]], [[4f4w]], [[4f4x]], [[4f4y]], [[4f4z]], [[4f50]]  - SaPol IV + DNA + nucleotide<br />
**[[4nlg]] - SaPol IV (mutant) + DNA<br />
**[[4dez]] – Pol IV – ''Mycobacterium smegmatis''
}}
}}


[[Category:Topic Page]]
[[Category:Topic Page]]

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Alexander Berchansky, David Canner, Michal Harel, Joel L. Sussman, Cori Damron, Emily Bray, Jaime Prilusky