2p3f: Difference between revisions
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'''Crystal structure of the factor Xa/NAP5 complex''' | {{Structure | ||
|PDB= 2p3f |SIZE=350|CAPTION= <scene name='initialview01'>2p3f</scene>, resolution 3.10Å | |||
|SITE= | |||
|LIGAND= <scene name='pdbligand=NA:SODIUM ION'>NA</scene> | |||
|ACTIVITY= | |||
|GENE= | |||
}} | |||
'''Crystal structure of the factor Xa/NAP5 complex''' | |||
==Overview== | ==Overview== | ||
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==About this Structure== | ==About this Structure== | ||
2P3F is a [ | 2P3F is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Ancylostoma_caninum Ancylostoma caninum] and [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P3F OCA]. | ||
==Reference== | ==Reference== | ||
Active and exo-site inhibition of human factor Xa: structure of des-Gla factor Xa inhibited by NAP5, a potent nematode anticoagulant protein from Ancylostoma caninum., Rios-Steiner JL, Murakami MT, Tulinsky A, Arni RK, J Mol Biol. 2007 Aug 17;371(3):774-86. Epub 2007 May 18. PMID:[http:// | Active and exo-site inhibition of human factor Xa: structure of des-Gla factor Xa inhibited by NAP5, a potent nematode anticoagulant protein from Ancylostoma caninum., Rios-Steiner JL, Murakami MT, Tulinsky A, Arni RK, J Mol Biol. 2007 Aug 17;371(3):774-86. Epub 2007 May 18. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17588602 17588602] | ||
[[Category: Ancylostoma caninum]] | [[Category: Ancylostoma caninum]] | ||
[[Category: Homo sapiens]] | [[Category: Homo sapiens]] | ||
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[[Category: nematode anticoagulant protein]] | [[Category: nematode anticoagulant protein]] | ||
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 18:08:07 2008'' | ||
Revision as of 19:08, 20 March 2008
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| Coordinates: | save as pdb, mmCIF, xml | ||||||
Crystal structure of the factor Xa/NAP5 complex
OverviewOverview
Hookworms are hematophagous nematodes capable of growth, development and subsistence in living host systems such as humans and other mammals. Approximately one billion, or one in six, people worldwide are infected by hookworms causing gastrointestinal blood loss and iron deficiency anemia. The hematophagous hookworm Ancylostoma caninum produces a family of small, disulfide-linked protein anticoagulants (75-84 amino acid residues). One of these nematode anticoagulant proteins, NAP5, inhibits the amidolytic activity of factor Xa (fXa) with K(i)=43 pM, and is the most potent natural fXa inhibitor identified thus far. The crystal structure of NAP5 bound at the active site of gamma-carboxyglutamic acid domainless factor Xa (des-fXa) has been determined at 3.1 A resolution, which indicates that Asp189 (fXa, S1 subsite) binds to Arg40 (NAP5, P1 site) in a mode similar to that of the BPTI/trypsin interaction. However, the hydroxyl group of Ser39 of NAP5 additionally forms a hydrogen bond (2.5 A) with His57 NE2 of the catalytic triad, replacing the hydrogen bond of Ser195 OG to the latter in the native structure, resulting in an interaction that has not been observed before. Furthermore, the C-terminal extension of NAP5 surprisingly interacts with the fXa exosite of a symmetry-equivalent molecule forming a short intermolecular beta-strand as observed in the structure of the NAPc2/fXa complex. This indicates that NAP5 can bind to fXa at the active site, or the exosite, and to fX at the exosite. However, unlike NAPc2, NAP5 does not inhibit fVIIa of the fVIIa/TF complex.
DiseaseDisease
Known disease associated with this structure: Factor X deficiency OMIM:[227600]
About this StructureAbout this Structure
2P3F is a Protein complex structure of sequences from Ancylostoma caninum and Homo sapiens. Full crystallographic information is available from OCA.
ReferenceReference
Active and exo-site inhibition of human factor Xa: structure of des-Gla factor Xa inhibited by NAP5, a potent nematode anticoagulant protein from Ancylostoma caninum., Rios-Steiner JL, Murakami MT, Tulinsky A, Arni RK, J Mol Biol. 2007 Aug 17;371(3):774-86. Epub 2007 May 18. PMID:17588602
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