2fvo: Difference between revisions
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[[Image:2fvo.gif|left|200px]] | [[Image:2fvo.gif|left|200px]] | ||
'''Docking of the modified RF1 X-ray structure into the Low Resolution Cryo-EM map of E.coli 70S Ribosome bound with RF1''' | {{Structure | ||
|PDB= 2fvo |SIZE=350|CAPTION= <scene name='initialview01'>2fvo</scene> | |||
|SITE= | |||
|LIGAND= | |||
|ACTIVITY= | |||
|GENE= prfA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 Thermotoga maritima]) | |||
}} | |||
'''Docking of the modified RF1 X-ray structure into the Low Resolution Cryo-EM map of E.coli 70S Ribosome bound with RF1''' | |||
==Overview== | ==Overview== | ||
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==About this Structure== | ==About this Structure== | ||
2FVO is a [ | 2FVO is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FVO OCA]. | ||
==Reference== | ==Reference== | ||
Interactions of the release factor RF1 with the ribosome as revealed by cryo-EM., Rawat U, Gao H, Zavialov A, Gursky R, Ehrenberg M, Frank J, J Mol Biol. 2006 Apr 7;357(4):1144-53. Epub 2006 Jan 30. PMID:[http:// | Interactions of the release factor RF1 with the ribosome as revealed by cryo-EM., Rawat U, Gao H, Zavialov A, Gursky R, Ehrenberg M, Frank J, J Mol Biol. 2006 Apr 7;357(4):1144-53. Epub 2006 Jan 30. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16476444 16476444] | ||
[[Category: Single protein]] | [[Category: Single protein]] | ||
[[Category: Thermotoga maritima]] | [[Category: Thermotoga maritima]] | ||
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[[Category: rf1 ribosome cryo-em]] | [[Category: rf1 ribosome cryo-em]] | ||
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 16:57:16 2008'' | ||
Revision as of 17:57, 20 March 2008
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| Gene: | prfA (Thermotoga maritima) | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Docking of the modified RF1 X-ray structure into the Low Resolution Cryo-EM map of E.coli 70S Ribosome bound with RF1
OverviewOverview
In eubacteria, termination of translation is signaled by any one of the stop codons UAA, UAG, and UGA moving into the ribosomal A site. Two release factors, RF1 and RF2, recognize and bind to the stop codons with different affinities and trigger the hydrolysis of the ester bond that links the polypeptide with the P-site tRNA. Cryo-electron microscopy (cryo-EM) results obtained in this study show that ribosome-bound RF1 is in an open conformation, unlike the closed conformation observed in the crystal structure of the free factor, allowing its simultaneous access to both the decoding center and the peptidyl-transferase center. These results are similar to those obtained for RF2, but there is an important difference in how the factors bind to protein L11, which forms part of the GTPase-associated center of the large ribosomal subunit. The difference in the binding position, C-terminal domain for RF2 versus N-terminal domain for RF1, explains a body of L11 mutation studies that revealed differential effects on the activity of the two factors. Very recent data obtained with small-angle X-ray scattering now reveal that the solution structure of RF1 is open, as here seen on the ribosome by cryo-EM, and not closed, as seen in the crystal.
About this StructureAbout this Structure
2FVO is a Single protein structure of sequence from Thermotoga maritima. Full crystallographic information is available from OCA.
ReferenceReference
Interactions of the release factor RF1 with the ribosome as revealed by cryo-EM., Rawat U, Gao H, Zavialov A, Gursky R, Ehrenberg M, Frank J, J Mol Biol. 2006 Apr 7;357(4):1144-53. Epub 2006 Jan 30. PMID:16476444
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