2knr: Difference between revisions
No edit summary |
No edit summary |
||
| Line 3: | Line 3: | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[2knr]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens_str._c58 Agrobacterium tumefaciens str. c58]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KNR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KNR FirstGlance]. <br> | <table><tr><td colspan='2'>[[2knr]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens_str._c58 Agrobacterium tumefaciens str. c58]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KNR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KNR FirstGlance]. <br> | ||
</td></tr><tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">AGR_C_1681, Atu0922 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=176299 Agrobacterium tumefaciens str. C58])</td></tr> | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">AGR_C_1681, Atu0922 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=176299 Agrobacterium tumefaciens str. C58])</td></tr> | ||
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2knr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2knr OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2knr RCSB], [http://www.ebi.ac.uk/pdbsum/2knr PDBsum]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2knr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2knr OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2knr RCSB], [http://www.ebi.ac.uk/pdbsum/2knr PDBsum]</span></td></tr> | ||
<table> | </table> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
| Line 29: | Line 29: | ||
</StructureSection> | </StructureSection> | ||
[[Category: Agrobacterium tumefaciens str. c58]] | [[Category: Agrobacterium tumefaciens str. c58]] | ||
[[Category: Arrowsmith, C H | [[Category: Arrowsmith, C H]] | ||
[[Category: | [[Category: Structural genomic]] | ||
[[Category: Fares, A | [[Category: Fares, A]] | ||
[[Category: Gutmanas, A | [[Category: Gutmanas, A]] | ||
[[Category: Lemak, A | [[Category: Lemak, A]] | ||
[[Category: Montelione, G T | [[Category: Montelione, G T]] | ||
[[Category: OCSP, Ontario Centre for Structural Proteomics]] | |||
[[Category: OCSP, Ontario Centre for Structural Proteomics | [[Category: Proteomics, Ontario Centre for Structural]] | ||
[[Category: Proteomics, Ontario Centre for Structural | [[Category: Semesi, A]] | ||
[[Category: Semesi, A | [[Category: Yee, S]] | ||
[[Category: Yee, S | |||
[[Category: Abacus]] | [[Category: Abacus]] | ||
[[Category: Fragment monte-carlo]] | [[Category: Fragment monte-carlo]] | ||
| Line 48: | Line 47: | ||
[[Category: Ontario centre for structural proteomic]] | [[Category: Ontario centre for structural proteomic]] | ||
[[Category: Protein nmr]] | [[Category: Protein nmr]] | ||
[[Category: Protein structure initiative | [[Category: PSI, Protein structure initiative]] | ||
[[Category: Target att13]] | [[Category: Target att13]] | ||
[[Category: Unknown function]] | [[Category: Unknown function]] | ||
Revision as of 23:42, 25 December 2014
Solution structure of protein Atu0922 from A. tumefaciens. Northeast Structural Genomics Consortium target AtT13. Ontario Center for Structural Proteomics target ATC0905Solution structure of protein Atu0922 from A. tumefaciens. Northeast Structural Genomics Consortium target AtT13. Ontario Center for Structural Proteomics target ATC0905
Structural highlights
Evolutionary Conservation Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf. Publication Abstract from PubMedThe quality of protein structures determined by nuclear magnetic resonance (NMR) spectroscopy is contingent on the number and quality of experimentally-derived resonance assignments, distance and angular restraints. Two key features of protein NMR data have posed challenges for the routine and automated structure determination of small to medium sized proteins; (1) spectral resolution - especially of crowded nuclear Overhauser effect spectroscopy (NOESY) spectra, and (2) the reliance on a continuous network of weak scalar couplings as part of most common assignment protocols. In order to facilitate NMR structure determination, we developed a semi-automated strategy that utilizes non-uniform sampling (NUS) and multidimensional decomposition (MDD) for optimal data collection and processing of selected, high resolution multidimensional NMR experiments, combined it with an ABACUS protocol for sequential and side chain resonance assignments, and streamlined this procedure to execute structure and refinement calculations in CYANA and CNS, respectively. Two graphical user interfaces (GUIs) were developed to facilitate efficient analysis and compilation of the data and to guide automated structure determination. This integrated method was implemented and refined on over 30 high quality structures of proteins ranging from 5.5 to 16.5 kDa in size. A novel strategy for NMR resonance assignment and protein structure determination.,Lemak A, Gutmanas A, Chitayat S, Karra M, Fares C, Sunnerhagen M, Arrowsmith CH J Biomol NMR. 2011 Jan;49(1):27-38. Epub 2010 Dec 14. PMID:21161328[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. References
|
| ||||||||||||||||
Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)
OCA- Agrobacterium tumefaciens str. c58
- Arrowsmith, C H
- Structural genomic
- Fares, A
- Gutmanas, A
- Lemak, A
- Montelione, G T
- OCSP, Ontario Centre for Structural Proteomics
- Proteomics, Ontario Centre for Structural
- Semesi, A
- Yee, S
- Abacus
- Fragment monte-carlo
- Methods development
- Muldidimensional decomposition
- Non-uniform sampling
- Ocsp
- Ontario centre for structural proteomic
- Protein nmr
- PSI, Protein structure initiative
- Target att13
- Unknown function