3scn: Difference between revisions

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[[Image:3scn.png|left|200px]]
==Crystal Structure of Rice BGlu1 E386G Mutant==
 
<StructureSection load='3scn' size='340' side='right' caption='[[3scn]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
{{STRUCTURE_3scn|  PDB=3scn  |  SCENE=  }}
== Structural highlights ==
 
<table><tr><td colspan='2'>[[3scn]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Oryza_sativa_japonica_group Oryza sativa japonica group]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SCN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3SCN FirstGlance]. <br>
===Crystal Structure of Rice BGlu1 E386G Mutant===
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
 
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2rgl|2rgl]], [[2rgm|2rgm]], [[3f4v|3f4v]], [[3f5i|3f5i]], [[3f5j|3f5j]], [[3f5k|3f5k]], [[3aht|3aht]], [[3sco|3sco]], [[3scp|3scp]], [[3scq|3scq]], [[3scr|3scr]], [[3scs|3scs]], [[3sct|3sct]], [[3scu|3scu]], [[3scv|3scv]], [[3scw|3scw]]</td></tr>
 
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BGLU1, BGLU7, LOC_Os03g49600, Os03g0703000, os3bglu7, OSJNBa0004L11.16 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=39947 Oryza sativa Japonica Group])</td></tr>
==About this Structure==
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-glucosidase Beta-glucosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.21 3.2.1.21] </span></td></tr>
[[3scn]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Oryza_sativa_japonica_group Oryza sativa japonica group]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SCN OCA].  
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3scn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3scn OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3scn RCSB], [http://www.ebi.ac.uk/pdbsum/3scn PDBsum]</span></td></tr>
</table>
== Function ==
[[http://www.uniprot.org/uniprot/BGL07_ORYSJ BGL07_ORYSJ]] Hydrolyzes p-nitrophenyl beta-D-glucoside, p-nitrophenyl beta-D-mannoside, p-nitrophenyl beta-D-galactoside, p-nitrophenyl beta-D-xyloside, p-nitrophenyl beta-D-fucoside, p-nitrophenyl beta-L-arabinoside, oligosaccharides, pyridoxine beta-D-glucoside and the cyanogenic glucosides amygdalin, prunasin and dhurrin. Possesses pyridoxine transglucosylation activity.<ref>PMID:14692878</ref> <ref>PMID:19766588</ref> <ref>PMID:18308333</ref> 


==See Also==
==See Also==
*[[Beta-glucosidase|Beta-glucosidase]]
*[[Beta-glucosidase|Beta-glucosidase]]
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Beta-glucosidase]]
[[Category: Beta-glucosidase]]
[[Category: Oryza sativa japonica group]]
[[Category: Oryza sativa japonica group]]
[[Category: Cairns, J R.Ketudat.]]
[[Category: Cairns, J R.Ketudat]]
[[Category: Kuaprasert, B.]]
[[Category: Kuaprasert, B]]
[[Category: Pengthaisong, S.]]
[[Category: Pengthaisong, S]]
[[Category: Withers, S G.]]
[[Category: Withers, S G]]
[[Category: Beta-alpha-barrel]]
[[Category: Beta-alpha-barrel]]
[[Category: Glycosynthase]]
[[Category: Glycosynthase]]

Revision as of 12:12, 25 December 2014

Crystal Structure of Rice BGlu1 E386G MutantCrystal Structure of Rice BGlu1 E386G Mutant

Structural highlights

3scn is a 2 chain structure with sequence from Oryza sativa japonica group. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:, ,
Gene:BGLU1, BGLU7, LOC_Os03g49600, Os03g0703000, os3bglu7, OSJNBa0004L11.16 (Oryza sativa Japonica Group)
Activity:Beta-glucosidase, with EC number 3.2.1.21
Resources:FirstGlance, OCA, RCSB, PDBsum

Function

[BGL07_ORYSJ] Hydrolyzes p-nitrophenyl beta-D-glucoside, p-nitrophenyl beta-D-mannoside, p-nitrophenyl beta-D-galactoside, p-nitrophenyl beta-D-xyloside, p-nitrophenyl beta-D-fucoside, p-nitrophenyl beta-L-arabinoside, oligosaccharides, pyridoxine beta-D-glucoside and the cyanogenic glucosides amygdalin, prunasin and dhurrin. Possesses pyridoxine transglucosylation activity.[1] [2] [3]

See Also

References

  1. Opassiri R, Hua Y, Wara-Aswapati O, Akiyama T, Svasti J, Esen A, Ketudat Cairns JR. Beta-glucosidase, exo-beta-glucanase and pyridoxine transglucosylase activities of rice BGlu1. Biochem J. 2004 Apr 1;379(Pt 1):125-31. PMID:14692878 doi:http://dx.doi.org/10.1042/BJ20031485
  2. Kuntothom T, Luang S, Harvey AJ, Fincher GB, Opassiri R, Hrmova M, Ketudat Cairns JR. Rice family GH1 glycoside hydrolases with beta-D-glucosidase and beta-D-mannosidase activities. Arch Biochem Biophys. 2009 Nov;491(1-2):85-95. doi: 10.1016/j.abb.2009.09.004., Epub 2009 Sep 18. PMID:19766588 doi:http://dx.doi.org/10.1016/j.abb.2009.09.004
  3. Chuenchor W, Pengthaisong S, Robinson RC, Yuvaniyama J, Oonanant W, Bevan DR, Esen A, Chen CJ, Opassiri R, Svasti J, Cairns JR. Structural insights into rice BGlu1 beta-glucosidase oligosaccharide hydrolysis and transglycosylation. J Mol Biol. 2008 Apr 4;377(4):1200-15. Epub 2008 Feb 4. PMID:18308333 doi:10.1016/j.jmb.2008.01.076

3scn, resolution 2.20Å

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