1uko: Difference between revisions
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'''Crystal structure of soybean beta-amylase mutant substituted at surface region''' | {{Structure | ||
|PDB= 1uko |SIZE=350|CAPTION= <scene name='initialview01'>1uko</scene>, resolution 2.10Å | |||
|SITE= | |||
|LIGAND= <scene name='pdbligand=SO4:SULFATE ION'>SO4</scene> | |||
|ACTIVITY= [http://en.wikipedia.org/wiki/Beta-amylase Beta-amylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.2 3.2.1.2] | |||
|GENE= | |||
}} | |||
'''Crystal structure of soybean beta-amylase mutant substituted at surface region''' | |||
==Overview== | ==Overview== | ||
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==About this Structure== | ==About this Structure== | ||
1UKO is a [ | 1UKO is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Glycine_max Glycine max]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UKO OCA]. | ||
==Reference== | ==Reference== | ||
Change in the crystal packing of soybean beta-amylase mutants substituted at a few surface amino acid residues., Kang YN, Adachi M, Mikami B, Utsumi S, Protein Eng. 2003 Nov;16(11):809-17. PMID:[http:// | Change in the crystal packing of soybean beta-amylase mutants substituted at a few surface amino acid residues., Kang YN, Adachi M, Mikami B, Utsumi S, Protein Eng. 2003 Nov;16(11):809-17. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/14631070 14631070] | ||
[[Category: Beta-amylase]] | [[Category: Beta-amylase]] | ||
[[Category: Glycine max]] | [[Category: Glycine max]] | ||
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[[Category: (alpha/beta)8 barrel]] | [[Category: (alpha/beta)8 barrel]] | ||
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 14:33:16 2008'' | ||
Revision as of 15:33, 20 March 2008
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| , resolution 2.10Å | |||||||
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| Ligands: | |||||||
| Activity: | Beta-amylase, with EC number 3.2.1.2 | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Crystal structure of soybean beta-amylase mutant substituted at surface region
OverviewOverview
In spite of the high similarity of amino acid sequence and three-dimensional structure between soybean beta-amylase (SBA) and sweet potato beta-amylase (SPB), their quaternary structure is quite different, being a monomer in SBA and a tetramer in SPB. Because most of the differences in amino acid sequences are found in the surface region, we tested the tetramerization of SBA by examining mutations of residues located at the surface. We designed the SBA tetramer using the SPB tetramer structure as a model and calculating the change of accessible surface area (DeltaASA) for each residue in order to select sites for the mutation. Two different mutant genes encoding SB3 (D374Y/L481R/P487D) and SB4 (K462S added to SB3), were constructed for expression in Escherichia coli and the recombinant proteins were purified. They existed as a monomer in solution, but gave completely different crystals from the native SBA. The asymmetric unit of the mutants contains four molecules, while that of native SBA contains one. The interactions of the created interfaces revealed that there were more intermolecular interactions in the SB3 than in the SB4 tetramer. The substituted charged residues on the surface are involved in interactions with adjacent molecules in a different way, forming a new crystal packing pattern.
About this StructureAbout this Structure
1UKO is a Single protein structure of sequence from Glycine max. Full crystallographic information is available from OCA.
ReferenceReference
Change in the crystal packing of soybean beta-amylase mutants substituted at a few surface amino acid residues., Kang YN, Adachi M, Mikami B, Utsumi S, Protein Eng. 2003 Nov;16(11):809-17. PMID:14631070
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