3dri: Difference between revisions
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==Crystal structure of Lactococcal OppA co-crystallized with an octamer peptide in an open conformation== | |||
<StructureSection load='3dri' size='340' side='right' caption='[[3dri]], [[Resolution|resolution]] 1.80Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[3dri]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Laclm Laclm]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DRI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DRI FirstGlance]. <br> | |||
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3drf|3drf]], [[3drg|3drg]], [[3drh|3drh]], [[3drj|3drj]], [[3drk|3drk]]</td></tr> | |||
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">oppA, llmg_0701 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=416870 LACLM])</td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dri FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dri OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dri RCSB], [http://www.ebi.ac.uk/pdbsum/3dri PDBsum]</span></td></tr> | |||
</table> | |||
== Evolutionary Conservation == | |||
[[Image:Consurf_key_small.gif|200px|right]] | |||
Check<jmol> | |||
<jmolCheckbox> | |||
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dr/3dri_consurf.spt"</scriptWhenChecked> | |||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | |||
<text>to colour the structure by Evolutionary Conservation</text> | |||
</jmolCheckbox> | |||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf]. | |||
<div style="clear:both"></div> | |||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
Oligopeptide-binding protein A (OppA) from Lactococcus lactis binds peptides of an exceptionally wide range of lengths (4-35 residues), with no apparent sequence preference. Here, we present the crystal structures of OppA in the open- and closed-liganded conformations. The structures directly explain the protein's phenomenal promiscuity. A huge cavity allows binding of very long peptides, and a lack of constraints for the position of the N and C termini of the ligand is compatible with binding of peptides with varying lengths. Unexpectedly, the peptide's amino-acid composition (but not the exact sequence) appears to have a function in selection, with a preference for proline-rich peptides containing at least one isoleucine. These properties can be related to the physiology of the organism: L. lactis is auxotrophic for branched chain amino acids and favours proline-rich caseins as a source of amino acids. We propose a new mechanism for peptide selection based on amino-acid composition rather than sequence. | |||
The structural basis for peptide selection by the transport receptor OppA.,Berntsson RP, Doeven MK, Fusetti F, Duurkens RH, Sengupta D, Marrink SJ, Thunnissen AM, Poolman B, Slotboom DJ EMBO J. 2009 Mar 19. PMID:19300437<ref>PMID:19300437</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
</div> | |||
==See Also== | ==See Also== | ||
*[[Oligopeptide-binding protein|Oligopeptide-binding protein]] | *[[Oligopeptide-binding protein|Oligopeptide-binding protein]] | ||
== References == | |||
== | <references/> | ||
__TOC__ | |||
</StructureSection> | |||
[[Category: Laclm]] | [[Category: Laclm]] | ||
[[Category: Berntsson, R P.A | [[Category: Berntsson, R P.A]] | ||
[[Category: Doeven, M K | [[Category: Doeven, M K]] | ||
[[Category: Duurkens, R H | [[Category: Duurkens, R H]] | ||
[[Category: Marrink, S J | [[Category: Marrink, S J]] | ||
[[Category: Poolman, B | [[Category: Poolman, B]] | ||
[[Category: Sengupta, D | [[Category: Sengupta, D]] | ||
[[Category: Slotboom, D J | [[Category: Slotboom, D J]] | ||
[[Category: Thunnissen, A M | [[Category: Thunnissen, A M]] | ||
[[Category: Oligo-peptide binding]] | [[Category: Oligo-peptide binding]] | ||
[[Category: Peptide binding protein]] | [[Category: Peptide binding protein]] | ||
[[Category: Venus fly-trap]] | [[Category: Venus fly-trap]] | ||
[[Category: Voluminous binding cavity]] | [[Category: Voluminous binding cavity]] | ||