1qyg: Difference between revisions

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, resolution 1.81Å

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ANTI-COCAINE ANTIBODY M82G2 COMPLEXED WITH BENZOYLECGONINE

OverviewOverview

Antibodies against cocaine and other drugs of abuse are the basis for diagnostic tests for the presence of those drugs in human serum. The 1.7A resolution crystal structure of the anti-cocaine monoclonal antibody M82G2 in complex with cocaine is presented. This structure determination was undertaken to establish the stereochemical features in the antibody binding site that confer specificity for cocaine, and as part of an ongoing project to understand the rules that govern molecular recognition. The cocaine-binding site can be characterized topologically as a narrow groove on the protein surface. The antibody utilizes water-mediated hydrogen bonding, and cation-pi and stacking (pi-pi) interactions to provide specificity. Comparison with the previously published structure of the anti-cocaine antibody GNC92H2 shows that binding of a small ligand can be achieved in diverse ways, both in terms of a binding site structure/topology and protein-ligand interactions.

About this StructureAbout this Structure

1QYG is a Protein complex structure of sequences from Mus musculus. Full crystallographic information is available from OCA.

ReferenceReference

Diversity in hapten recognition: structural study of an anti-cocaine antibody M82G2., Pozharski E, Moulin A, Hewagama A, Shanafelt AB, Petsko GA, Ringe D, J Mol Biol. 2005 Jun 10;349(3):570-82. Epub 2005 Apr 21. PMID:15885702

Page seeded by OCA on Thu Mar 20 13:44:25 2008

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OCA

@@ Line 1: / Line 1: @@
-[[Image:1qyg.jpg|left|200px]]<br /><applet load="1qyg" size="350" color="white" frame="true" align="right" spinBox="true"
+[[Image:1qyg.jpg|left|200px]]
-caption="1qyg, resolution 1.81&Aring;" />
-'''ANTI-COCAINE ANTIBODY M82G2 COMPLEXED WITH BENZOYLECGONINE'''<br />
+ {{Structure
+|PDB= 1qyg |SIZE=350|CAPTION= <scene name='initialview01'>1qyg</scene>, resolution 1.81&Aring;
+|SITE=
+|LIGAND= <scene name='pdbligand=BCG:3-(BENZOYLOXY)-8-METHYL-8-AZABICYCLO[3.2.1]OCTANE-2-CARBOXYLIC ACID'>BCG</scene>
+|ACTIVITY=
+|GENE=
+}}
+'''ANTI-COCAINE ANTIBODY M82G2 COMPLEXED WITH BENZOYLECGONINE'''
 ==Overview==
@@ Line 7: / Line 16: @@
 ==About this Structure==
-QYG is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus] with <scene name='pdbligand=BCG:'>BCG</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QYG OCA].
+QYG is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QYG OCA].
 ==Reference==
-Diversity in hapten recognition: structural study of an anti-cocaine antibody M82G2., Pozharski E, Moulin A, Hewagama A, Shanafelt AB, Petsko GA, Ringe D, J Mol Biol. 2005 Jun 10;349(3):570-82. Epub 2005 Apr 21. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15885702 15885702]
+Diversity in hapten recognition: structural study of an anti-cocaine antibody M82G2., Pozharski E, Moulin A, Hewagama A, Shanafelt AB, Petsko GA, Ringe D, J Mol Biol. 2005 Jun 10;349(3):570-82. Epub 2005 Apr 21. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15885702 15885702]
 [[Category: Mus musculus]]
 [[Category: Protein complex]]
@@ Line 22: / Line 31: @@
 [[Category: fab]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 14:45:09 2008''
+''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 13:44:25 2008''