3nxg: Difference between revisions

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-{{STRUCTURE_3nxg|  PDB=3nxg  |  SCENE=  }}
+==JC polyomavirus VP1==
-===JC polyomavirus VP1===
+<StructureSection load='3nxg' size='340' side='right' caption='[[3nxg]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
-{{ABSTRACT_PUBMED_20951965}}
+== Structural highlights ==
+<table><tr><td colspan='2'>[[3nxg]] is a 5 chain structure with sequence from [http://en.wikipedia.org/wiki/Jc_polyomavirus Jc polyomavirus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NXG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3NXG FirstGlance]. <br>
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
+<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3nxd|3nxd]], [[3bwq|3bwq]], [[1vpn|1vpn]]</td></tr>
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">VP1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10632 JC polyomavirus])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3nxg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3nxg OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3nxg RCSB], [http://www.ebi.ac.uk/pdbsum/3nxg PDBsum]</span></td></tr>
+</table>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+The human JC polyomavirus (JCV) causes a fatal demyelinating disease, progressive multifocal leukoencephalopathy (PML), in immunocompromised individuals. Current treatment options for PML are inadequate. Sialylated oligosaccharides and the serotonin receptor are known to be necessary for JCV entry, but the molecular interactions underlying JCV attachment remain unknown. Using glycan array screening and viral infectivity assays, we identify a linear sialylated pentasaccharide with the sequence NeuNAc-alpha2,6-Gal-beta1,4-GlcNAc-beta1,3-Gal-beta1,4-Glc (LSTc) present on host glycoproteins and glycolipids as a specific JCV recognition motif. The crystal structure of the JCV capsid protein VP1 was solved alone and in complex with LSTc. It reveals extensive interactions with the terminal sialic acid of the LSTc motif and specific recognition of an extended conformation of LSTc. Mutations in the JCV oligosaccharide-binding sites abolish cell attachment, viral spread, and infectivity, further validating the importance of this interaction. Our findings provide a powerful platform for the development of antiviral compounds.
-==Function==
+Structure-function analysis of the human JC polyomavirus establishes the LSTc pentasaccharide as a functional receptor motif.,Neu U, Maginnis MS, Palma AS, Stroh LJ, Nelson CD, Feizi T, Atwood WJ, Stehle T Cell Host Microbe. 2010 Oct 21;8(4):309-19. PMID:20951965<ref>PMID:20951965</ref>
-[[http://www.uniprot.org/uniprot/VP1_POVJC VP1_POVJC]] Forms an icosahedral capsid with a T=7 symmetry and a 40 nm diameter. The capsid is composed of 72 pentamers linked to each other by disulfide bonds and associated with VP2 or VP3 proteins. Interacts with a N-linked glycoprotein containing terminal alpha(2-6)-linked sialic acids on the cell surface to provide virion attachment to target cell. The serotonergic receptor 5HT2AR also acts as a cellular receptor for JCV on human glial cells. Once attached, the virions enter predominantly by a ligand-inducible clathrin-dependent pathway and traffic to the ER. Inside the endoplasmic reticulum, the protein folding machinery isomerizes VP1 interpentamer disulfide bonds, thereby triggering initial uncoating. Next, the virion uses the endoplasmic reticulum-associated degradation machinery to probably translocate in the cytosol before reaching the nucleus. Nuclear entry of the viral DNA involves the selective exposure and importin recognition of VP2/Vp3 nuclear localization signal. In late phase of infection, neo-synthesized VP1 encapsulates replicated genomic DNA at nuclear domains called promyelocytic leukemia (PML) bodies, and participates in rearranging nucleosomes around the viral DNA.<ref>PMID:10666259</ref>
-==About this Structure==
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-[[3nxg]] is a 5 chain structure with sequence from [http://en.wikipedia.org/wiki/Jc_polyomavirus Jc polyomavirus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NXG OCA].
+</div>
+== References ==
-==Reference==
+<references/>
-<ref group="xtra">PMID:020951965</ref><references group="xtra"/><references/>
+__TOC__
+</StructureSection>
 [[Category: Jc polyomavirus]]
-[[Category: Neu, U.]]
+[[Category: Neu, U]]
-[[Category: Stehle, T.]]
+[[Category: Stehle, T]]
-[[Category: Stroeh, L J.]]
+[[Category: Stroeh, L J]]
 [[Category: Beta-sandwich jelly roll]]
 [[Category: Viral protein]]