3md1: Difference between revisions

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{{STRUCTURE_3md1|  PDB=3md1  |  SCENE=  }}
==Crystal Structure of the Second RRM Domain of Yeast Poly(U)-Binding Protein (Pub1)==
===Crystal Structure of the Second RRM Domain of Yeast Poly(U)-Binding Protein (Pub1)===
<StructureSection load='3md1' size='340' side='right' caption='[[3md1]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
{{ABSTRACT_PUBMED_020438847}}
== Structural highlights ==
 
<table><tr><td colspan='2'>[[3md1]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MD1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3MD1 FirstGlance]. <br>
==Function==
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
[[http://www.uniprot.org/uniprot/PUB1_YEAST PUB1_YEAST]] May be associated with hnRNA within the nucleus and remains associated during nucleocytoplasmic mRNA transport, once the proteins are in the cytoplasm, disassembly of PUB1-RNA complexes may occur prior to PAB1 binding and formation of a translationally competent RNP complex. Binds to polyadenylated RNA; prefers to bind poly(rU); binds to T-rich single-stranded DNA.
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3md3|3md3]]</td></tr>
 
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3md1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3md1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3md1 RCSB], [http://www.ebi.ac.uk/pdbsum/3md1 PDBsum]</span></td></tr>
==About this Structure==
</table>
[[3md1]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MD1 OCA].  
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/md/3md1_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Saccharomyces cerevisiae]]
[[Category: Saccharomyces cerevisiae]]
[[Category: Cui, Y.]]
[[Category: Cui, Y]]
[[Category: Li, H.]]
[[Category: Li, H]]
[[Category: Li, Y.]]
[[Category: Li, Y]]
[[Category: Niu, L.]]
[[Category: Niu, L]]
[[Category: Shi, H.]]
[[Category: Shi, H]]
[[Category: Teng, M.]]
[[Category: Teng, M]]
[[Category: Nucleus]]
[[Category: Nucleus]]
[[Category: Pub1]]
[[Category: Pub1]]

Revision as of 20:23, 18 December 2014

Crystal Structure of the Second RRM Domain of Yeast Poly(U)-Binding Protein (Pub1)Crystal Structure of the Second RRM Domain of Yeast Poly(U)-Binding Protein (Pub1)

Structural highlights

3md1 is a 2 chain structure with sequence from Saccharomyces cerevisiae. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:
Resources:FirstGlance, OCA, RCSB, PDBsum

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

3md1, resolution 1.60Å

Drag the structure with the mouse to rotate

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