3kci: Difference between revisions

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-{{STRUCTURE_3kci|  PDB=3kci  |  SCENE=  }}
+==The third RLD domain of HERC2==
-===The third RLD domain of HERC2===
+<StructureSection load='3kci' size='340' side='right' caption='[[3kci]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
+== Structural highlights ==
-==Function==
+<table><tr><td colspan='2'>[[3kci]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KCI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3KCI FirstGlance]. <br>
-[[http://www.uniprot.org/uniprot/HERC2_HUMAN HERC2_HUMAN]] E3 ubiquitin-protein ligase that regulates ubiquitin-dependent retention of repair proteins on damaged chromosomes. Recruited to sites of DNA damage in response to ionizing radiation (IR) and facilitates the assembly of UBE2N and RNF8 promoting DNA damage-induced formation of 'Lys-63'-linked ubiquitin chains. Acts as a mediator of binding specificity between UBE2N and RNF8. Involved in the maintenance of RNF168 levels. E3 ubiquitin-protein ligase that promotes the ubiquitination and proteasomal degradation of XPA which influences the circadian oscillation of DNA excision repair activity.<ref>PMID:20023648</ref> <ref>PMID:20304803</ref> <ref>PMID:22508508</ref>
+</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">D15F37S1, DKFZP547P028, HERC2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3kci FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kci OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3kci RCSB], [http://www.ebi.ac.uk/pdbsum/3kci PDBsum]</span></td></tr>
-==About this Structure==
+</table>
-[[3kci]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KCI OCA].
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
-==Reference==
+Check<jmol>
-<references group="xtra"/><references/>
+  <jmolCheckbox>
+    <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kc/3kci_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
 [[Category: Homo sapiens]]
-[[Category: Arrowsmith, C H.]]
+[[Category: Arrowsmith, C H]]
-[[Category: Bochkarev, A.]]
+[[Category: Bochkarev, A]]
-[[Category: Bountra, C.]]
+[[Category: Bountra, C]]
-[[Category: Dhe-Paganon, S.]]
+[[Category: Dhe-Paganon, S]]
-[[Category: Edwards, A M.]]
+[[Category: Edwards, A M]]
-[[Category: Qiu, L.]]
+[[Category: Qiu, L]]
-[[Category: Vesterberg, A.]]
+[[Category: Vesterberg, A]]
-[[Category: Walker, J R.]]
+[[Category: Walker, J R]]
-[[Category: Weigelt, J.]]
+[[Category: Weigelt, J]]
 [[Category: Ligase]]
 [[Category: Metal-binding]]
@@ Line 25: / Line 33: @@
 [[Category: Rcc1]]
 [[Category: Sgc]]
-[[Category: Structural genomics consortium]]
+[[Category: Structural genomic]]
 [[Category: Ubl conjugation pathway]]
 [[Category: Wd repeat]]
 [[Category: Wd40]]
 [[Category: Zinc-finger]]