1p3h: Difference between revisions

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Revision as of 14:19, 20 March 2008

File:1p3h.gif

, resolution 2.8Å

Ligands:

and

Gene:

GROS OR GROES OR MOPB OR CPN10 OR RV3418C OR MT3527 OR MTCY78.11 (Mycobacterium tuberculosis)

Coordinates:

save as pdb, mmCIF, xml

Crystal Structure of the Mycobacterium tuberculosis chaperonin 10 tetradecamer

OverviewOverview

The crystal structure of Mycobacterium tuberculosis chaperonin 10 (cpn10(Mt)) has been determined to a resolution of 2.8 A. Two dome-shaped cpn10(Mt) heptamers complex through loops at their bases to form a tetradecamer with 72 symmetry and a spherical cage-like structure. The hollow interior enclosed by the tetradecamer is lined with hydrophilic residues and has dimensions of 30 A perpendicular to and 60 A along the sevenfold axis. Tetradecameric cpn10(Mt) has also been observed in solution by dynamic light scattering. Through its base loop sequence cpn10(Mt) is known to be the agent in the bacterium responsible for bone resorption and for the contribution towards its strong T-cell immunogenicity. Superimposition of the cpn10(Mt) sequences 26 to 32 and 66 to 72 and E. coli GroES 25 to 31 associated with bone resorption activity shows them to have similar conformations and structural features, suggesting that there may be a common receptor for the bone resorption sequences. The base loops of cpn10s in general also attach to the corresponding chaperonin 60 (cpn60) to enclose unfolded protein and to facilitate its correct folding in vivo. Electron density corresponding to a partially disordered protein subunit appears encapsulated within the interior dome cavity of each heptamer. This suggests that the binding of substrates to cpn10 is possible in the absence of cpn60.

About this StructureAbout this Structure

1P3H is a Single protein structure of sequence from Mycobacterium tuberculosis. This structure supersedes the now removed PDB entry 1JH2. Full crystallographic information is available from OCA.

ReferenceReference

Mycobacterium tuberculosis chaperonin 10 heptamers self-associate through their biologically active loops., Roberts MM, Coker AR, Fossati G, Mascagni P, Coates AR, Wood SP, J Bacteriol. 2003 Jul;185(14):4172-85. PMID:12837792

Page seeded by OCA on Thu Mar 20 13:19:20 2008

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:1p3h.gif|left|200px]]<br /><applet load="1p3h" size="350" color="white" frame="true" align="right" spinBox="true"
+[[Image:1p3h.gif|left|200px]]
-caption="1p3h, resolution 2.8&Aring;" />
-'''Crystal Structure of the Mycobacterium tuberculosis chaperonin 10 tetradecamer'''<br />
+ {{Structure
+|PDB= 1p3h |SIZE=350|CAPTION= <scene name='initialview01'>1p3h</scene>, resolution 2.8&Aring;
+|SITE=
+|LIGAND= <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene> and <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>
+|ACTIVITY=
+|GENE= GROS OR GROES OR MOPB OR CPN10 OR RV3418C OR MT3527 OR MTCY78.11 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1773 Mycobacterium tuberculosis])
+}}
+'''Crystal Structure of the Mycobacterium tuberculosis chaperonin 10 tetradecamer'''
 ==Overview==
@@ Line 7: / Line 16: @@
 ==About this Structure==
-P3H is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Mycobacterium_tuberculosis Mycobacterium tuberculosis] with <scene name='pdbligand=CA:'>CA</scene> and <scene name='pdbligand=MPD:'>MPD</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. This structure supersedes the now removed PDB entry 1JH2. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1P3H OCA].
+P3H is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Mycobacterium_tuberculosis Mycobacterium tuberculosis]. This structure supersedes the now removed PDB entry 1JH2. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1P3H OCA].
 ==Reference==
-Mycobacterium tuberculosis chaperonin 10 heptamers self-associate through their biologically active loops., Roberts MM, Coker AR, Fossati G, Mascagni P, Coates AR, Wood SP, J Bacteriol. 2003 Jul;185(14):4172-85. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=12837792 12837792]
+Mycobacterium tuberculosis chaperonin 10 heptamers self-associate through their biologically active loops., Roberts MM, Coker AR, Fossati G, Mascagni P, Coates AR, Wood SP, J Bacteriol. 2003 Jul;185(14):4172-85. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12837792 12837792]
 [[Category: Mycobacterium tuberculosis]]
 [[Category: Single protein]]
@@ Line 27: / Line 36: @@
 [[Category: protein structure initiative]]
 [[Category: psi]]
-[[Category: structural genomics]]
+[[Category: structural genomic]]
 [[Category: tb structural genomics consortium]]
 [[Category: tbsgc]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 14:24:41 2008''
+''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 13:19:20 2008''