1nmo: Difference between revisions
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
[[Image:1nmo.jpg|left|200px]] | [[Image:1nmo.jpg|left|200px]] | ||
'''Structural genomics, protein ybgI, unknown function''' | {{Structure | ||
|PDB= 1nmo |SIZE=350|CAPTION= <scene name='initialview01'>1nmo</scene>, resolution 2.20Å | |||
|SITE= | |||
|LIGAND= <scene name='pdbligand=FE:FE (III) ION'>FE</scene> | |||
|ACTIVITY= | |||
|GENE= YBGI OR B0710 OR Z0861 OR ECS0735 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id= Escherichia coli, and Escherichia coli O157:H7]) | |||
}} | |||
'''Structural genomics, protein ybgI, unknown function''' | |||
==Overview== | ==Overview== | ||
| Line 7: | Line 16: | ||
==About this Structure== | ==About this Structure== | ||
1NMO is a [ | 1NMO is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli,_and_escherichia_coli_o157:h7 Escherichia coli, and escherichia coli o157:h7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NMO OCA]. | ||
==Reference== | ==Reference== | ||
Crystal structure of Escherichia coli protein ybgI, a toroidal structure with a dinuclear metal site., Ladner JE, Obmolova G, Teplyakov A, Howard AJ, Khil PP, Camerini-Otero RD, Gilliland GL, BMC Struct Biol. 2003 Sep 30;3:7. PMID:[http:// | Crystal structure of Escherichia coli protein ybgI, a toroidal structure with a dinuclear metal site., Ladner JE, Obmolova G, Teplyakov A, Howard AJ, Khil PP, Camerini-Otero RD, Gilliland GL, BMC Struct Biol. 2003 Sep 30;3:7. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/14519207 14519207] | ||
[[Category: Escherichia coli, and escherichia coli o157:h7]] | [[Category: Escherichia coli, and escherichia coli o157:h7]] | ||
[[Category: Single protein]] | [[Category: Single protein]] | ||
| Line 23: | Line 32: | ||
[[Category: hypothetical protein]] | [[Category: hypothetical protein]] | ||
[[Category: s2f]] | [[Category: s2f]] | ||
[[Category: structural | [[Category: structural genomic]] | ||
[[Category: structure 2 function project]] | [[Category: structure 2 function project]] | ||
[[Category: toroidal structure]] | [[Category: toroidal structure]] | ||
[[Category: ybgi]] | [[Category: ybgi]] | ||
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 12:58:53 2008'' | ||
Revision as of 13:58, 20 March 2008
| |||||||
| , resolution 2.20Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | |||||||
| Gene: | YBGI OR B0710 OR Z0861 OR ECS0735 (Escherichia coli, and Escherichia coli O157:H7) | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Structural genomics, protein ybgI, unknown function
OverviewOverview
BACKGROUND: The protein encoded by the gene ybgI was chosen as a target for a structural genomics project emphasizing the relation of protein structure to function. RESULTS: The structure of the ybgI protein is a toroid composed of six polypeptide chains forming a trimer of dimers. Each polypeptide chain binds two metal ions on the inside of the toroid. CONCLUSION: The toroidal structure is comparable to that of some proteins that are involved in DNA metabolism. The di-nuclear metal site could imply that the specific function of this protein is as a hydrolase-oxidase enzyme.
About this StructureAbout this Structure
1NMO is a Single protein structure of sequence from Escherichia coli, and escherichia coli o157:h7. Full crystallographic information is available from OCA.
ReferenceReference
Crystal structure of Escherichia coli protein ybgI, a toroidal structure with a dinuclear metal site., Ladner JE, Obmolova G, Teplyakov A, Howard AJ, Khil PP, Camerini-Otero RD, Gilliland GL, BMC Struct Biol. 2003 Sep 30;3:7. PMID:14519207
Page seeded by OCA on Thu Mar 20 12:58:53 2008