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Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
{{#tree:id=OrganizedByTopic|openlevels=0|


===Adenine riboswitch===
*Adenine riboswitch
[[1y26]] – AR + adenine – ''Vibrio vulnificus''<br />
[[3ivn]] – BsAR (mutant) – ''Bacillus subtilis''<br />
[[3la5]] - BsAR (mutant) + azacytosine<br />
===Guanine riboswitch===
[[1y27]] – BsGR residues 185-252 + guanine<br />
[[2g9c]], [[3fo4]], [[3fo6]], [[3ges]], [[3gog]], [[3rkf]] - BsGR (mutant) + guanine derivative<br />
[[3got]] - BsGR (mutant) + adenine derivative<br />
[[2xo1]] - BsGR  aptamer domain + adenine derivative<br />
[[3g4m]], [[3ger]] - BsGR  + guanine derivative<br />
[[2xnz]] - BsGR  aptamer domain + guanine derivative<br />
[[2xo0]] - BsGR  aptamer domain + triazine derivative<br />
[[2ees]], [[2eet]], [[2eeu]], [[2eev]], [[2eew]] - BsGR (mutant) + hypoxanthine<br />
[[3gao]] - BsGR  + xanthine<br />
[[2xnw]] – BsGR + Mn<br />
[[4fe5]], [[4fej]], [[4fel]], [[4fen]], [[4feo]], [[4fep]] – GR + hypoxanthine – synthetic<br />
===Thiamine pyrophosphate riboswitch===
[[2gdi]] – TPPR + TPP – synthetic<br />
[[2hoj]], [[2hok]], [[2hol]] – EcTPPR + TPP + metal ion – ''Escherichia coli''<br />
[[2hom]] – EcTPPR + TMP<br />
[[2hoo]], [[2hop]] – EcTPPR + TPP analog<br />
[[3d2g]], [[3d2v]], [[3d2x]] - TPPR + TPP analog – ''Arabidopsis thaliana''
===S-adenosylmethionine riboswitch===
[[2gis]], [[4aob]], [[4b5r]] – TtSAMR + SAM – ''Thermoanaerobacter tengcongensis''<br />
[[3iqr]], [[2ydh]], [[2ygh]] - TtSAMR (mutant) + SAM<br />
[[3iqp]] - TtSAMR<br />
[[2qwy]], [[3e5c]], [[3e5e]], [[3e5f]], [[3iqn]] - SAMR + SAM – synthetic<br />
[[4kqy]] – BsSAMR + SAM<br />
===S-adenosylhomocysteine riboswitch===
[[3npn]], [[3npq]] – SAHR + SAH – ''Ralstonia solanacearum''<br />
===Lysine riboswitch===
[[3d0u]] – TmKR ligand-binding domain + Lysine – ''Thermotoga maritima''<br />
[[4erj]] – TmKR + aminocaproic acid<br />
[[4erl]] – TmKR + Lys + Gly<br />
===FMN riboswitch===
[[3f2q]], [[3f2t]], [[3f2w]], [[3f2x]], [[3f2y]], [[3f30]], [[3f4e]] – FnFMNR + FMN – ''Fusobacterium nucleatum''<br />
[[2yie]] - FnFMNR aptamer domain + FMN<br />
[[3f4g]], [[3f4h]] – FnFMNR + flavin derivative<br />
[[2yif]] - FnFMNR + GTP
===Pre-queosine riboswitch===
[[3fu2]], [[3k1v]] – BsQ1R + queosine<br />
[[3gca]] – TtQ0R + queosine<br />
[[3q50]], [[3q51]] – TtQ1R aptamer domain + queosine<br />
[[4jf2]] – Q1R + GTP + deaza-aminomethyl guanine – ''Lactobacillus rhamnosus''<br />
===C-di-GMP riboswitch===
[[3irw]], [[3mxh]] – VcGMPR + C-di-GMP + GTP + U1 small nuclear ribonucleoprotein – ''Vibrio cholerae''<br />
[[3iwn]] – VcGMPR + C-di-GMP + U1 small nuclear ribonucleoprotein<br />
[[3mum]], [[3mur]], [[3mut]] - VcGMPR (mutant) + C-di-GMP + U1 small nuclear ribonucleoprotein<br />
[[3muv]] - VcGMPR (mutant) + C-di-AMP + U1 small nuclear ribonucleoprotein<br />
[[3q3z]] - GMPR + C-di-GMP – Clostridium acetobutylicum
===Glycine riboswitch===
[[3owi]], [[3oww]], [[3owz]] – VcGlyR + glycine<br />
[[3ox0]], [[3oxe]], [[3oxj]], [[3oxm]] – VcGlyR + GDP + cytidine cyclic phosphate<br />
[[3oxb]], [[3oxd]] – VcGlyR (mutant) + GDP + cytidine cyclic phosphate<br />
[[3p49]] – FnGlyR + U1 small nuclear ribonucleoprotein + glycine<br />
===M-Box riboswitch===
[[3pdr]] – BsMBR + Mn<br />
===T-Box riboswitch===
[[4lck]] – sTBR + tRNA-Gly + ribosomal protein YBXF – synthetic<br />
[[4mgn]] – sTBR + tRNA-Gly <br />


===Tetrahydrofolate riboswitch===
**[[1y26]] – AR + adenine – ''Vibrio vulnificus''<br />
[[3suh]], [[3sux]] – EsTHFR + THF derivative – ''Eubacterium siraeum''<br />
**[[3ivn]] – BsAR (mutant) – ''Bacillus subtilis''<br />
[[3suy]] - EsTHFR + cytidine cyclic phosphate<br />
**[[3la5]] - BsAR (mutant) + azacytosine<br />
[[3sd1]] – THFR + pteridine derivative – synthetic<br />
[[3sd3]] – THFR (mutant) + pteridine derivative – synthetic<br />
===Fluoride riboswitch===
[[3vrs]] – TpR + Mn + K + F – ''Thermotoga petrophila''<br />
[[4en5]] – TpR + Mg + Tl + F <br />
[[4enc]] – TpR + Mg + K + F <br />
[[4ena]] – TpR + Mg + Cs + GTP + F <br />
[[4enb]] – TpR + Mg + Ir + K + GTP + F <br />


===Cobalamine riboswitch===
*Guanine riboswitch
[[4frg]], [[4frn]], [[4gma]], [[4gxy]] – CoR + aptamer domain – ''Marine metagenome''<br />


**[[1y27]] – BsGR residues 185-252 + guanine<br />
**[[2g9c]], [[3fo4]], [[3fo6]], [[3ges]], [[3gog]], [[3rkf]] - BsGR (mutant) + guanine derivative<br />
**[[3got]] - BsGR (mutant) + adenine derivative<br />
**[[2xo1]] - BsGR  aptamer domain + adenine derivative<br />
**[[3g4m]], [[3ger]] - BsGR  + guanine derivative<br />
**[[2xnz]] - BsGR  aptamer domain + guanine derivative<br />
**[[2xo0]] - BsGR  aptamer domain + triazine derivative<br />
**[[2ees]], [[2eet]], [[2eeu]], [[2eev]], [[2eew]] - BsGR (mutant) + hypoxanthine<br />
**[[3gao]] - BsGR  + xanthine<br />
**[[2xnw]] – BsGR + Mn<br />
**[[4fe5]], [[4fej]], [[4fel]], [[4fen]], [[4feo]], [[4fep]] – GR + hypoxanthine – synthetic<br />
*Thiamine pyrophosphate riboswitch
**[[2gdi]] – TPPR + TPP – synthetic<br />
**[[2hoj]], [[2hok]], [[2hol]] – EcTPPR + TPP + metal ion – ''Escherichia coli''<br />
**[[2hom]] – EcTPPR + TMP<br />
**[[2hoo]], [[2hop]] – EcTPPR + TPP analog<br />
**[[3d2g]], [[3d2v]], [[3d2x]] - TPPR + TPP analog – ''Arabidopsis thaliana''
*S-adenosylmethionine riboswitch
**[[2gis]], [[4aob]], [[4b5r]] – TtSAMR + SAM – ''Thermoanaerobacter tengcongensis''<br />
**[[3iqr]], [[2ydh]], [[2ygh]] - TtSAMR (mutant) + SAM<br />
**[[3iqp]] - TtSAMR<br />
**[[2qwy]], [[3e5c]], [[3e5e]], [[3e5f]], [[3iqn]] - SAMR + SAM – synthetic<br />
**[[4kqy]] – BsSAMR + SAM<br />
*S-adenosylhomocysteine riboswitch
**[[3npn]], [[3npq]] – SAHR + SAH – ''Ralstonia solanacearum''<br />
*Lysine riboswitch
**[[3d0u]] – TmKR ligand-binding domain + Lysine – ''Thermotoga maritima''<br />
**[[4erj]] – TmKR + aminocaproic acid<br />
**[[4erl]] – TmKR + Lys + Gly<br />
*FMN riboswitch
**[[3f2q]], [[3f2t]], [[3f2w]], [[3f2x]], [[3f2y]], [[3f30]], [[3f4e]] – FnFMNR + FMN – ''Fusobacterium nucleatum''<br />
**[[2yie]] - FnFMNR aptamer domain + FMN<br />
**[[3f4g]], [[3f4h]] – FnFMNR + flavin derivative<br />
**[[2yif]] - FnFMNR + GTP
*Pre-queosine riboswitch
**[[3fu2]], [[3k1v]] – BsQ1R + queosine<br />
**[[3gca]] – TtQ0R + queosine<br />
**[[3q50]], [[3q51]] – TtQ1R aptamer domain + queosine<br />
**[[4jf2]] – Q1R + GTP + deaza-aminomethyl guanine – ''Lactobacillus rhamnosus''<br />
*C-di-GMP riboswitch
**[[3irw]], [[3mxh]] – VcGMPR + C-di-GMP + GTP + U1 small nuclear ribonucleoprotein – ''Vibrio cholerae''<br />
**[[3iwn]] – VcGMPR + C-di-GMP + U1 small nuclear ribonucleoprotein<br />
**[[3mum]], [[3mur]], [[3mut]] - VcGMPR (mutant) + C-di-GMP + U1 small nuclear ribonucleoprotein<br />
**[[3muv]] - VcGMPR (mutant) + C-di-AMP + U1 small nuclear ribonucleoprotein<br />
**[[3q3z]] - GMPR + C-di-GMP – ''Clostridium acetobutylicum''
*Glycine riboswitch
**[[3owi]], [[3oww]], [[3owz]] – VcGlyR + glycine<br />
**[[3ox0]], [[3oxe]], [[3oxj]], [[3oxm]] – VcGlyR + GDP + cytidine cyclic phosphate<br />
**[[3oxb]], [[3oxd]] – VcGlyR (mutant) + GDP + cytidine cyclic phosphate<br />
**[[3p49]] – FnGlyR + U1 small nuclear ribonucleoprotein + glycine<br />
*M-Box riboswitch
**[[3pdr]] – BsMBR + Mn<br />
*T-Box riboswitch
**[[4lck]] – sTBR + tRNA-Gly + ribosomal protein YBXF – synthetic<br />
**[[4mgn]] – sTBR + tRNA-Gly <br />
*Tetrahydrofolate riboswitch
**[[3suh]], [[3sux]] – EsTHFR + THF derivative – ''Eubacterium siraeum''<br />
**[[3suy]] - EsTHFR + cytidine cyclic phosphate<br />
**[[3sd1]] – THFR + pteridine derivative – synthetic<br />
**[[3sd3]] – THFR (mutant) + pteridine derivative – synthetic<br />
*Fluoride riboswitch
**[[3vrs]] – TpR + Mn + K + F – ''Thermotoga petrophila''<br />
**[[4en5]] – TpR + Mg + Tl + F <br />
**[[4enc]] – TpR + Mg + K + F <br />
**[[4ena]] – TpR + Mg + Cs + GTP + F <br />
**[[4enb]] – TpR + Mg + Ir + K + GTP + F <br />
*Cobalamine riboswitch
**[[4frg]], [[4frn]], [[4gma]], [[4gxy]] – CoR + aptamer domain – ''Marine metagenome''<br />
}}
[[Category: Topic Page]]
[[Category: Topic Page]]

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Alexander Berchansky, Joel L. Sussman, Karsten Theis
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