3gnf: Difference between revisions

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[[Image:3gnf.png|left|200px]]
==P1 Crystal structure of the N-terminal R1-R7 of murine MVP==
<StructureSection load='3gnf' size='340' side='right' caption='[[3gnf]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[3gnf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GNF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GNF FirstGlance]. <br>
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3gf5|3gf5]], [[3gng|3gng]]</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Mvp ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 Mus musculus])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gnf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gnf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3gnf RCSB], [http://www.ebi.ac.uk/pdbsum/3gnf PDBsum]</span></td></tr>
</table>
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gn/3gnf_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Vaults are ubiquitous ribonucleoprotein complexes involved in a diversity of cellular processes, including multidrug resistance, transport mechanisms and signal transmission. The vault particle shows a barrel-shaped structure organized in two identical moieties, each consisting of 39 copies of the major vault protein MVP. Earlier data indicated that vault halves can dissociate at acidic pH. The crystal structure of the vault particle solved at 8 A resolution, together with the 2.1-A structure of the seven N-terminal domains (R1-R7) of MVP, reveal the interactions governing vault association and provide an explanation for a reversible dissociation induced by low pH. The structural comparison with the recently published 3.5 A model shows major discrepancies, both in the main chain tracing and in the side chain assignment of the two terminal domains R1 and R2.


{{STRUCTURE_3gnf|  PDB=3gnf  |  SCENE=  }}
The mechanism of vault opening from the high resolution structure of the N-terminal repeats of MVP.,Querol-Audi J, Casanas A, Uson I, Luque D, Caston JR, Fita I, Verdaguer N EMBO J. 2009 Nov 4;28(21):3450-7. Epub 2009 Sep 24. PMID:19779459<ref>PMID:19779459</ref>


===P1 Crystal structure of the N-terminal R1-R7 of murine MVP===
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
</div>
{{ABSTRACT_PUBMED_19779459}}
== References ==
 
<references/>
==About this Structure==
__TOC__
[[3gnf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GNF OCA].
</StructureSection>
 
==Reference==
<ref group="xtra">PMID:019779459</ref><references group="xtra"/>
[[Category: Mus musculus]]
[[Category: Mus musculus]]
[[Category: Casanas, A.]]
[[Category: Casanas, A]]
[[Category: Caston, J R.]]
[[Category: Caston, J R]]
[[Category: Fita, I.]]
[[Category: Fita, I]]
[[Category: Luque, D.]]
[[Category: Luque, D]]
[[Category: Querol-Audi, J.]]
[[Category: Querol-Audi, J]]
[[Category: Uson, I.]]
[[Category: Uson, I]]
[[Category: Verdaguer, N.]]
[[Category: Verdaguer, N]]
[[Category: Beta sheet]]
[[Category: Beta sheet]]
[[Category: Phosphoprotein]]
[[Category: Phosphoprotein]]
[[Category: Ribonucleoprotein]]
[[Category: Ribonucleoprotein]]
[[Category: Structural protein]]
[[Category: Structural protein]]

Revision as of 12:37, 8 December 2014

P1 Crystal structure of the N-terminal R1-R7 of murine MVPP1 Crystal structure of the N-terminal R1-R7 of murine MVP

Structural highlights

3gnf is a 1 chain structure with sequence from Mus musculus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Gene:Mvp (Mus musculus)
Resources:FirstGlance, OCA, RCSB, PDBsum

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Publication Abstract from PubMed

Vaults are ubiquitous ribonucleoprotein complexes involved in a diversity of cellular processes, including multidrug resistance, transport mechanisms and signal transmission. The vault particle shows a barrel-shaped structure organized in two identical moieties, each consisting of 39 copies of the major vault protein MVP. Earlier data indicated that vault halves can dissociate at acidic pH. The crystal structure of the vault particle solved at 8 A resolution, together with the 2.1-A structure of the seven N-terminal domains (R1-R7) of MVP, reveal the interactions governing vault association and provide an explanation for a reversible dissociation induced by low pH. The structural comparison with the recently published 3.5 A model shows major discrepancies, both in the main chain tracing and in the side chain assignment of the two terminal domains R1 and R2.

The mechanism of vault opening from the high resolution structure of the N-terminal repeats of MVP.,Querol-Audi J, Casanas A, Uson I, Luque D, Caston JR, Fita I, Verdaguer N EMBO J. 2009 Nov 4;28(21):3450-7. Epub 2009 Sep 24. PMID:19779459[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

  1. Querol-Audi J, Casanas A, Uson I, Luque D, Caston JR, Fita I, Verdaguer N. The mechanism of vault opening from the high resolution structure of the N-terminal repeats of MVP. EMBO J. 2009 Nov 4;28(21):3450-7. Epub 2009 Sep 24. PMID:19779459 doi:10.1038/emboj.2009.274

3gnf, resolution 2.10Å

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