3e3x: Difference between revisions

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OCA

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-[[Image:3e3x.png|left|200px]]
+==The C-terminal part of BipA protein from Vibrio parahaemolyticus RIMD 2210633==
+<StructureSection load='3e3x' size='340' side='right' caption='[[3e3x]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
-{{STRUCTURE_3e3x|  PDB=3e3x  |  SCENE=  }}
+== Structural highlights ==
+<table><tr><td colspan='2'>[[3e3x]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus Vibrio parahaemolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E3X OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3E3X FirstGlance]. <br>
-===The C-terminal part of BipA protein from Vibrio parahaemolyticus RIMD 2210633===
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MLY:N-DIMETHYL-LYSINE'>MLY</scene>, <scene name='pdbligand=MLZ:N-METHYL-LYSINE'>MLZ</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">bipA, VP0122 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=670 Vibrio parahaemolyticus])</td></tr>
-==About this Structure==
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3e3x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e3x OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3e3x RCSB], [http://www.ebi.ac.uk/pdbsum/3e3x PDBsum], [http://www.topsan.org/Proteins/MCSG/3e3x TOPSAN]</span></td></tr>
-[[3e3x]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus Vibrio parahaemolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E3X OCA].
+</table>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e3/3e3x_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
 [[Category: Vibrio parahaemolyticus]]
-[[Category: Clancy, S.]]
+[[Category: Clancy, S]]
-[[Category: Duggan, E.]]
+[[Category: Duggan, E]]
-[[Category: Joachimiak, A.]]
+[[Category: Joachimiak, A]]
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+[[Category: Structural genomic]]
-[[Category: Mulligan, R.]]
+[[Category: Mulligan, R]]
-[[Category: Nocek, B.]]
+[[Category: Nocek, B]]
 [[Category: Bipa protein]]
 [[Category: Gtp-binding]]
 [[Category: Hydrolase]]
 [[Category: Mcsg]]
-[[Category: Midwest center for structural genomic]]
 [[Category: Nucleotide-binding]]
-[[Category: Protein structure initiative]]
+[[Category: PSI, Protein structure initiative]]
-[[Category: Psi2]]
-[[Category: Structural genomic]]