1ksv: Difference between revisions
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
[[Image:1ksv.gif|left|200px]] | [[Image:1ksv.gif|left|200px]] | ||
'''STRUCTURE OF RSUA''' | {{Structure | ||
|PDB= 1ksv |SIZE=350|CAPTION= <scene name='initialview01'>1ksv</scene>, resolution 2.65Å | |||
|SITE= | |||
|LIGAND= <scene name='pdbligand=U:URIDINE-5'-MONOPHOSPHATE'>U</scene> | |||
|ACTIVITY= [http://en.wikipedia.org/wiki/Pseudouridylate_synthase Pseudouridylate synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.70 4.2.1.70] | |||
|GENE= | |||
}} | |||
'''STRUCTURE OF RSUA''' | |||
==Overview== | ==Overview== | ||
| Line 7: | Line 16: | ||
==About this Structure== | ==About this Structure== | ||
1KSV is a [ | 1KSV is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KSV OCA]. | ||
==Reference== | ==Reference== | ||
Structure of the 16S rRNA pseudouridine synthase RsuA bound to uracil and UMP., Sivaraman J, Sauve V, Larocque R, Stura EA, Schrag JD, Cygler M, Matte A, Nat Struct Biol. 2002 May;9(5):353-8. PMID:[http:// | Structure of the 16S rRNA pseudouridine synthase RsuA bound to uracil and UMP., Sivaraman J, Sauve V, Larocque R, Stura EA, Schrag JD, Cygler M, Matte A, Nat Struct Biol. 2002 May;9(5):353-8. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11953756 11953756] | ||
[[Category: Escherichia coli]] | [[Category: Escherichia coli]] | ||
[[Category: Pseudouridylate synthase]] | [[Category: Pseudouridylate synthase]] | ||
| Line 26: | Line 35: | ||
[[Category: rsua]] | [[Category: rsua]] | ||
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 12:21:41 2008'' | ||
Revision as of 13:21, 20 March 2008
| |||||||
| , resolution 2.65Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | |||||||
| Activity: | Pseudouridylate synthase, with EC number 4.2.1.70 | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
STRUCTURE OF RSUA
OverviewOverview
In Escherichia coli, the pseudouridine synthase RsuA catalyzes formation of pseudouridine (psi) at position 516 in 16S rRNA during assembly of the 30S ribosomal subunit. We have determined the crystal structure of RsuA bound to uracil at 2.0 A resolution and to uridine 5'-monophosphate (UMP) at 2.65 A resolution. RsuA consists of an N-terminal domain connected by an extended linker to the central and C-terminal domains. Uracil and UMP bind in a cleft between the central and C-terminal domains near the catalytic residue Asp 102. The N-terminal domain shows structural similarity to the ribosomal protein S4. Despite only 15% amino acid identity, the other two domains are structurally similar to those of the tRNA-specific psi-synthase TruA, including the position of the catalytic Asp. Our results suggest that all four families of pseudouridine synthases share the same fold of their catalytic domain(s) and uracil-binding site.
About this StructureAbout this Structure
1KSV is a Single protein structure of sequence from Escherichia coli. Full crystallographic information is available from OCA.
ReferenceReference
Structure of the 16S rRNA pseudouridine synthase RsuA bound to uracil and UMP., Sivaraman J, Sauve V, Larocque R, Stura EA, Schrag JD, Cygler M, Matte A, Nat Struct Biol. 2002 May;9(5):353-8. PMID:11953756
Page seeded by OCA on Thu Mar 20 12:21:41 2008