3lm4: Difference between revisions
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==Crystal Structure of 2,3-Dihydroxy Biphenyl dioxygenase from Rhodococcus sp. (strain RHA1)== | |||
<StructureSection load='3lm4' size='340' side='right' caption='[[3lm4]], [[Resolution|resolution]] 1.80Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[3lm4]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodococcus_jostii Rhodococcus jostii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LM4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3LM4 FirstGlance]. <br> | |||
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=HPX:(2Z,4E)-2-HYDROXY-6-OXO-6-PHENYLHEXA-2,4-DIENOIC+ACID'>HPX</scene>, <scene name='pdbligand=PEO:HYDROGEN+PEROXIDE'>PEO</scene></td></tr> | |||
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |||
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Catechol_2,3-dioxygenase Catechol 2,3-dioxygenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.13.11.2 1.13.11.2] </span></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3lm4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lm4 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3lm4 RCSB], [http://www.ebi.ac.uk/pdbsum/3lm4 PDBsum]</span></td></tr> | |||
</table> | |||
== Evolutionary Conservation == | |||
[[Image:Consurf_key_small.gif|200px|right]] | |||
Check<jmol> | |||
<jmolCheckbox> | |||
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lm/3lm4_consurf.spt"</scriptWhenChecked> | |||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | |||
<text>to colour the structure by Evolutionary Conservation</text> | |||
</jmolCheckbox> | |||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf]. | |||
<div style="clear:both"></div> | |||
== | ==See Also== | ||
[[ | *[[Dioxygenase|Dioxygenase]] | ||
__TOC__ | |||
</StructureSection> | |||
[[Category: Catechol 2,3-dioxygenase]] | [[Category: Catechol 2,3-dioxygenase]] | ||
[[Category: Rhodococcus jostii]] | [[Category: Rhodococcus jostii]] | ||
[[Category: Burley, S K | [[Category: Burley, S K]] | ||
[[Category: Ibrahim, B Syed | [[Category: Ibrahim, B Syed]] | ||
[[Category: Kumaran, D | [[Category: Kumaran, D]] | ||
[[Category: | [[Category: Structural genomic]] | ||
[[Category: Swaminathan, S | [[Category: Swaminathan, S]] | ||
[[Category: 2hydroxyl 6 oxo 6 phenyl hexa 2-4 dienoic acid]] | [[Category: 2hydroxyl 6 oxo 6 phenyl hexa 2-4 dienoic acid]] | ||
[[Category: Dioxygenase]] | [[Category: Dioxygenase]] | ||
[[Category: New | [[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]] | ||
[[Category: Oxidoreductase]] | [[Category: Oxidoreductase]] | ||
[[Category: Peroxide]] | [[Category: Peroxide]] | ||
[[Category: Protein structure initiative | [[Category: PSI, Protein structure initiative]] | ||