3dby: Difference between revisions

← Older edit Newer edit →

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:3dby.png|left|200px]]
+==Crystal structure of uncharacterized protein from Bacillus cereus G9241 (CSAP Target)==
+<StructureSection load='3dby' size='340' side='right' caption='[[3dby]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-{{STRUCTURE_3dby|  PDB=3dby  |  SCENE=  }}
+== Structural highlights ==
+<table><tr><td colspan='2'>[[3dby]] is a 20 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_cereus Bacillus cereus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DBY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DBY FirstGlance]. <br>
-===Crystal structure of uncharacterized protein from Bacillus cereus G9241 (CSAP Target)===
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BCE_G9241_0798 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1396 Bacillus cereus])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dby FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dby OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dby RCSB], [http://www.ebi.ac.uk/pdbsum/3dby PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3dby TOPSAN]</span></td></tr>
-==About this Structure==
+</table>
-[[3dby]] is a 20 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_cereus Bacillus cereus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DBY OCA].
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/db/3dby_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
 [[Category: Bacillus cereus]]
-[[Category: Almo, S C.]]
+[[Category: Almo, S C]]
-[[Category: Bonanno, J B.]]
+[[Category: Bonanno, J B]]
-[[Category: Burley, S K.]]
+[[Category: Burley, S K]]
-[[Category: Freeman, J.]]
+[[Category: Freeman, J]]
-[[Category: Groshong, C.]]
+[[Category: Groshong, C]]
-[[Category: Hu, S.]]
+[[Category: Hu, S]]
-[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
-[[Category: Ozyurt, S.]]
-[[Category: Ramagopal, U A.]]
-[[Category: Rodgers, L.]]
-[[Category: Wasserman, S.]]
-[[Category: New york sgx research center for structural genomic]]
-[[Category: Nysgxrc]]
-[[Category: Protein structure initiative]]
-[[Category: Psi-2]]
 [[Category: Structural genomic]]
+[[Category: Ozyurt, S]]
+[[Category: Ramagopal, U A]]
+[[Category: Rodgers, L]]
+[[Category: Wasserman, S]]
+[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
+[[Category: PSI, Protein structure initiative]]
 [[Category: Unknown function]]