Amylase: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Andrea Gorrell, Shane Riley, Randi Woodbeck, David Canner, Michal Harel, Alexander Berchansky, Jaime Prilusky, Joel L. Sussman, Ann Taylor

@@ Line 25: / Line 25: @@
 </StructureSection>
-=3D structures of Amylase=
+==3D structures of ricin ( Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} ) ==
-Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
+{{#tree:id=OrganizedByTopic|openlevels=0|
-===α-amylase===
+* α-amylase
-[[3ij7]], [[1xv8]], [[1c8q]], [[1bsi]], [[1smd]], [[1hny]] – hAAM – human
+** [[3ij7]], [[1xv8]], [[1c8q]], [[1bsi]], [[1smd]], [[1hny]] – hAAM – human
+** [[1xgz]], [[1q4n]], [[1kb3]], [[1kbb]], [[1kbk]], [[1kgu]], [[1kgw]], [[1kgx]], [[1jxj]], [[1jxk]], [[2cpu]] - hAAM (mutant)
-[[1xgz]], [[1q4n]], [[1kb3]], [[1kbb]], [[1kbk]], [[1kgu]], [[1kgw]], [[1kgx]], [[1jxj]], [[1jxk]], [[2cpu]] - hAAM (mutant)
+** [[3n8t]] – TkAAM – ''Thermococcus kodakarensis''
+** [[3k8k]] – BtAAM – ''Bacterioides thetaiotaomicron''
-[[3n8t]] – TkAAM – ''Thermococcus kodakarensis''
+** [[3kwx]], [[2guy]] – AoAAM – ''Aspergilluys oryzae''
+** [[2wpg]] – AAM – ''Xanthomonas campestris''
-[[3k8k]] – BtAAM – ''Bacterioides thetaiotaomicron''
+** [[2wc7]], [[2wcs]], [[2wkg]] – AAM catalytic region – ''Cyanobacterium''
+** [[3bh4]] – BaAAM – ''Bacillus amyloliquefaciens''
-[[3kwx]], [[2guy]] – AoAAM – ''Aspergilluys oryzae''
+** [[1e3x]], [[1e43]] – BaAAM chimera
+** [[1ht6]], [[1amy]] - bAAM – barley
-[[2wpg]] – AAM – ''Xanthomonas campestris''
+** [[3bsg]] – bAAM (mutant)
+** [[3dhu]] – AAM – ''Lactobacillus plantarum''
-[[2wc7]], [[2wcs]], [[2wkg]] – AAM catalytic region – ''Cyanobacterium''
+** [[3dc0]] – AAM – ''Bacillus KR8104''
+** [[3bcf]], [[1wza]] – HoAAM – ''Halothermothrix orenii''
-[[3bh4]] – BaAAM – ''Bacillus amyloliquefaciens''
+** [[2die]], [[1wp6]] – AAM alkaline – ''Bacillus sp.''
+** [[1ud2]], [[1ud4]], [[1ud5]], [[1ud6]], [[1ud8]] - AAM – ''Bacillus sp. KSM-K38''
-[[1e3x]], [[1e43]] – BaAAM chimera
+** [[1ud3]] – AAM (mutant) – ''Bacillus sp. KSM-K38''
+** [[2gjr]] – BhAAM – ''Bacillus halmapalus''
-[[1ht6]], [[1amy]] - bAAM – barley
+** [[2b5d]] – AAM – ''Thermotoga maritima''
+** [[2c3g]], [[2c3v]] – BhaloAAM – ''Bacillus halodurans''
-[[3bsg]] – bAAM (mutant)
+** [[1ji1]], [[1ji2]], [[1bvz]] - TvAAM – ''Thermoactinomyces vulgaris''
+** [[1wzk]], [[1wzl]], [[1wzm]], [[1izj]], [[1izk]], [[1jf5]], [[1jf6]] – TvAAM (mutant)
-[[3dhu]] – AAM – ''Lactobacillus plantarum''
+** [[1mwo]], [[1mxd]] – PwAAM – ''Pyrococcus woesei''
+** [[1ob0]], [[1bli]] - BlAAM (mutant) – ''Bacillus licheniformis''<br />
-[[3dc0]] – AAM – ''Bacillus KR8104''
+** [[1vjs]] – BlAAM precursor<br />
+** [[1bpl]] – BlAAM<br />
-[[3bcf]], [[1wza]] – HoAAM – ''Halothermothrix orenii''
+** [[1b0i]], [[1aqm]], [[1aqh]] – PhAAM - ''Pseudoalteromonas haloplanktis''
+** [[1jd7]], [[1jd9]] - PhAAM (mutant)
-[[2die]], [[1wp6]] – AAM alkaline – ''Bacillus sp.''
+** [[1g5a]] – NpAAM – ''Neisseria polysaccharea''
+** [[1hvx]] - BaAAM – ''Bacillus stearothermophilus''
-[[1ud2]], [[1ud4]], [[1ud5]], [[1ud6]], [[1ud8]] - AAM – ''Bacillus sp. KSM-K38''
+** [[1qho]] – GsAAM – ''Geobacillus stearothermophilus''
+** [[1jae]] – TmAAM – ''Tenebrio molitor''
-[[1ud3]] – AAM (mutant) – ''Bacillus sp. KSM-K38''
+** [[1pif]] – pAAM – pig
+** [[6taa]], [[2aaa]] - AoAAM<br />
-[[2gjr]] – BhAAM – ''Bacillus halmapalus''
+** [[4aee]] – AAM catalytic domain – ''Staphylothermus marinus''<br />
+** [[3ren]] – AAM – ''Clostridium perfringens''<br />
-[[2b5d]] – AAM – ''Thermotoga maritima''
+** [[3vm5]] – AAM – ''Oryzias latipes''<br />
+** [[3vm7]] – AAM – ''Malbranchea cinnamomea''<br />
-[[2c3g]], [[2c3v]] – BhaloAAM – ''Bacillus halodurans''
+** [[4gkl]] – AAM – ''Thermotoga neapolitana''<br />
+** [[4ays]] – AAM – ''Deinococcus radiodurans''<br />
-[[1ji1]], [[1ji2]], [[1bvz]] - TvAAM – ''Thermoactinomyces vulgaris''
+** ''AAM binary complexes''
+*** [[1xd0]], [[1xd1]], [[1cpu]], [[1jfh]] - hAAM + saccharide<br />
-[[1wzk]], [[1wzl]], [[1wzm]], [[1izj]], [[1izk]], [[1jf5]], [[1jf6]] – TvAAM (mutant)
+*** [[1b2y]], [[1xcw]], [[1xcx]] - hAAM + acarbose<br />
+*** [[3blk]], [[3blp]], [[1z32]], [[1nm9]], [[1mfu]], [[1mfv]], [[3cpu]] - hAAM (mutant) + saccharide<br />
-[[1mwo]], [[1mxd]] – PwAAM – ''Pyrococcus woesei''
+*** [[3dhp]], [[1xh0]], [[1xh2]] - hAAM (mutant) + acarbose<br />
+*** [[3ij8]], [[3ij9]] – hAAM catalytic intermediate
-[[1ob0]], [[1bli]] - BlAAM (mutant) – ''Bacillus licheniformis''<br />
+*** [[2qmk]], [[3bai]] – hAAM + NO2
-[[1vjs]] – BlAAM precursor<br />
+*** [[3baw]] – hAAM + N3
-[[1bpl]] – BlAAM<br />
+*** [[3bax]] - hAAM (mutant) + N3
-[[1b0i]], [[1aqm]], [[1aqh]] – PhAAM - ''Pseudoalteromonas haloplanktis''
+*** [[3bak]] – hAAM (mutant) + NO3
+*** [[1xh1]] - hAAM (mutant) + Cl
-[[1jd7]], [[1jd9]] - PhAAM (mutant)
+*** [[2qv4]], [[3baj]], [[3bay]] - hAAM + acarbose + NO2
+*** [[3old]], [[3ole]], [[3olg]], [[3oli]] – hAAM + statin
-[[1g5a]] – NpAAM – ''Neisseria polysaccharea''
+*** [[1u2y]], [[1u30]], [[1u33]] – hAAM + inhibitor<br />
+*** [[4gqq]] – hAAM + ethyl caffeate<br />
-[[1hvx]] - BaAAM – ''Bacillus stearothermophilus''
+*** [[4gqr]] – hAAM + myricetin<br />
+*** [[3n92]], [[3n98]] – TkAAM + saccharide<br />
-[[1qho]] – GsAAM – ''Geobacillus stearothermophilus''
+*** [[3l2l]], [[3l2m]], [[1vah]], [[1wo2]], [[1ua3]], [[1pig]], [[1ppi]] - pAAM + saccharide<br />
+*** [[1hx0]] – pAAM + acarbose<br />
-[[1jae]] – TmAAM – ''Tenebrio molitor''
+*** [[1kxq]], [[1kxt]], [[1kxv]] – pAAM + antibody VHH fragment
+*** [[1bvn]], [[1dhk]] – pAAM + protein inhibitor
-[[1pif]] – pAAM – pig
+*** [[1ose]] – pAAM + acarbose<br />
+*** [[3k8l]] - BtAAM (mutant) + saccharide<br />
-[[6taa]], [[2aaa]] - AoAAM<br />
+*** [[3k8m]] - BtAAM + acarbose<br />
-[[4aee]] – AAM catalytic domain – ''Staphylothermus marinus''<br />
+*** [[2d2o]], [[1jl8]], [[1jib]] - TvAAM + saccharide<br />
-[[3ren]] – AAM – ''Clostridium perfringens''<br />
+*** [[3a6o]] – TvAAM + acarbose<br />
-[[3vm5]] – AAM – ''Oryzias latipes''<br />
+*** [[2d0f]], [[2d0g]], [[2d0h]], [[1vb9]], [[1vfm]], [[1vfo]], [[1vfu]], [[1uh2]], [[1uh4]] - TvAAM (mutant) + saccharide<br />
-[[3vm7]] – AAM – ''Malbranchea cinnamomea''<br />
+*** [[1uh3]] - TvAAM (mutant) + acarbose<br />
-[[4gkl]] – AAM – ''Thermotoga neapolitana''<br />
+*** [[1ava]] – bAAM + protein inhibitor
-[[4ays]] – AAM – ''Deinococcus radiodurans''<br />
+*** [[1bg9]], [[1rpk]] - bAAM + acarbose<br />
+*** [[1p6w]] – bAAM + substrate analog
-''AAM binary complexes''
+*** [[1rp8]], [[1b1y]], [[1rp9]] - bAAM (mutant) + saccharide<br />
+*** [[3bsh]], [[2qpu]], [[2qps]] - bAAM (mutant) + acarbose<br />
-[[1xd0]], [[1xd1]], [[1cpu]], [[1jfh]] - hAAM + saccharide<br />
+** [[3bcd]] - HoAAM + saccharide<br />
-[[1b2y]], [[1xcw]], [[1xcx]] - hAAM + acarbose<br />
+}}
-[[3blk]], [[3blp]], [[1z32]], [[1nm9]], [[1mfu]], [[1mfv]], [[3cpu]] - hAAM (mutant) + saccharide<br />
-[[3dhp]], [[1xh0]], [[1xh2]] - hAAM (mutant) + acarbose<br />
-[[3ij8]], [[3ij9]] – hAAM catalytic intermediate
-[[2qmk]], [[3bai]] – hAAM + NO2
-[[3baw]] – hAAM + N3
-[[3bax]] - hAAM (mutant) + N3
-[[3bak]] – hAAM (mutant) + NO3
-[[1xh1]] - hAAM (mutant) + Cl
-[[2qv4]], [[3baj]], [[3bay]] - hAAM + acarbose + NO2
-[[3old]], [[3ole]], [[3olg]], [[3oli]] – hAAM + statin
-[[1u2y]], [[1u30]], [[1u33]] – hAAM + inhibitor<br />
-[[4gqq]] – hAAM + ethyl caffeate<br />
-[[4gqr]] – hAAM + myricetin<br />
-[[3n92]], [[3n98]] – TkAAM + saccharide<br />
-[[3l2l]], [[3l2m]], [[1vah]], [[1wo2]], [[1ua3]], [[1pig]], [[1ppi]] - pAAM + saccharide<br />
-[[1hx0]] – pAAM + acarbose<br />
-[[1kxq]], [[1kxt]], [[1kxv]] – pAAM + antibody VHH fragment
-[[1bvn]], [[1dhk]] – pAAM + protein inhibitor
-[[1ose]] – pAAM + acarbose<br />
-[[3k8l]] - BtAAM (mutant) + saccharide<br />
-[[3k8m]] - BtAAM + acarbose<br />
-[[2d2o]], [[1jl8]], [[1jib]] - TvAAM + saccharide<br />
-[[3a6o]] – TvAAM + acarbose<br />
-[[2d0f]], [[2d0g]], [[2d0h]], [[1vb9]], [[1vfm]], [[1vfo]], [[1vfu]], [[1uh2]], [[1uh4]] - TvAAM (mutant) + saccharide<br />
-[[1uh3]] - TvAAM (mutant) + acarbose<br />
-[[1ava]] – bAAM + protein inhibitor
-[[1bg9]], [[1rpk]] - bAAM + acarbose<br />
-[[1p6w]] – bAAM + substrate analog
-[[1rp8]], [[1b1y]], [[1rp9]] - bAAM (mutant) + saccharide<br />
-[[3bsh]], [[2qpu]], [[2qps]] - bAAM (mutant) + acarbose<br />
-[[3bcd]] - HoAAM + saccharide<br />
 [[3bc9]] - HoAAM + acarbose<br />
 [[2gjp]], [[1w9x]] - BhAAM + saccharide<br />