1i6d: Difference between revisions
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[[Image:1i6d.jpg|left|200px]]< | [[Image:1i6d.jpg|left|200px]] | ||
'''SOLUTION STRUCTURE OF THE FUNCTIONAL DOMAIN OF PARACOCCUS DENITRIFICANS CYTOCHROME C552 IN THE REDUCED STATE''' | {{Structure | ||
|PDB= 1i6d |SIZE=350|CAPTION= <scene name='initialview01'>1i6d</scene> | |||
|SITE= | |||
|LIGAND= <scene name='pdbligand=HEC:HEME C'>HEC</scene> | |||
|ACTIVITY= | |||
|GENE= CYCM ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=266 Paracoccus denitrificans]) | |||
}} | |||
'''SOLUTION STRUCTURE OF THE FUNCTIONAL DOMAIN OF PARACOCCUS DENITRIFICANS CYTOCHROME C552 IN THE REDUCED STATE''' | |||
==Overview== | ==Overview== | ||
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==About this Structure== | ==About this Structure== | ||
1I6D is a [ | 1I6D is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Paracoccus_denitrificans Paracoccus denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1I6D OCA]. | ||
==Reference== | ==Reference== | ||
Solution structure and dynamics of the functional domain of Paracoccus denitrificans cytochrome c(552) in both redox states., Reincke B, Perez C, Pristovsek P, Lucke C, Ludwig C, Lohr F, Rogov VV, Ludwig B, Ruterjans H, Biochemistry. 2001 Oct 16;40(41):12312-20. PMID:[http:// | Solution structure and dynamics of the functional domain of Paracoccus denitrificans cytochrome c(552) in both redox states., Reincke B, Perez C, Pristovsek P, Lucke C, Ludwig C, Lohr F, Rogov VV, Ludwig B, Ruterjans H, Biochemistry. 2001 Oct 16;40(41):12312-20. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11591150 11591150] | ||
[[Category: Paracoccus denitrificans]] | [[Category: Paracoccus denitrificans]] | ||
[[Category: Single protein]] | [[Category: Single protein]] | ||
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[[Category: isotope enrichment {13c/15n}]] | [[Category: isotope enrichment {13c/15n}]] | ||
[[Category: nmr spectroscopy]] | [[Category: nmr spectroscopy]] | ||
[[Category: redox | [[Category: redox state]] | ||
[[Category: solution structure]] | [[Category: solution structure]] | ||
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 11:46:03 2008'' | ||
Revision as of 12:46, 20 March 2008
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| Ligands: | |||||||
| Gene: | CYCM (Paracoccus denitrificans) | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
SOLUTION STRUCTURE OF THE FUNCTIONAL DOMAIN OF PARACOCCUS DENITRIFICANS CYTOCHROME C552 IN THE REDUCED STATE
OverviewOverview
A soluble and fully functional 10.5 kDa fragment of the 18.2 kDa membrane-bound cytochrome c(552) from Paracoccus denitrificans has been heterologously expressed and (13)C/(15)N-labeled to study the structural features of this protein in both redox states. Well-resolved solution structures of both the reduced and oxidized states have been determined using high-resolution heteronuclear NMR. The overall protein topology consists of two long terminal helices and three shorter helices surrounding the heme moiety. No significant redox-induced structural differences have been observed. (15)N relaxation rates and heteronuclear NOE values were determined at 500 and 600 MHz. Several residues located around the heme moiety display increased backbone mobility in both oxidation states, while helices I, III, and V as well as the two concatenated beta-turns between Leu30 and Arg36 apparently form a less flexible domain within the protein structure. Major redox-state-dependent differences of the internal backbone mobility on the picosecond-nanosecond time scale were not evident. Hydrogen exchange experiments demonstrated that the slow-exchanging amide proton resonances mainly belong to the helices and beta-turns, corresponding to the regions with high order parameters in the dynamics data. Despite this correlation, the backbone amide protons of the oxidized cytochrome c(552) exchange considerably faster with the solvent compared to the reduced protein. Using both differential scanning calorimetry as well as temperature-dependent NMR spectroscopy, a significant difference in the thermostabilities of the two redox states has been observed, with transition temperatures of 349.9 K (76.8 degrees C) for reduced and 307.5 K (34.4 degrees C) for oxidized cytochrome c(552). These results suggest a clearly distinct backbone stability between the two oxidation states.
About this StructureAbout this Structure
1I6D is a Single protein structure of sequence from Paracoccus denitrificans. Full crystallographic information is available from OCA.
ReferenceReference
Solution structure and dynamics of the functional domain of Paracoccus denitrificans cytochrome c(552) in both redox states., Reincke B, Perez C, Pristovsek P, Lucke C, Ludwig C, Lohr F, Rogov VV, Ludwig B, Ruterjans H, Biochemistry. 2001 Oct 16;40(41):12312-20. PMID:11591150 [[Category: isotope enrichment {13c/15n}]]
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