1dz0: Difference between revisions

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[[Image:1dz0.png|left|200px]]
==REDUCED AZURIN II FROM ALCALIGENES XYLOSOXIDANS==
<StructureSection load='1dz0' size='340' side='right' caption='[[1dz0]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[1dz0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Achromobacter_xylosoxidans Achromobacter xylosoxidans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DZ0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1DZ0 FirstGlance]. <br>
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU1:COPPER+(I)+ION'>CU1</scene><br>
<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1dyz|1dyz]]</td></tr>
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dz0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dz0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1dz0 RCSB], [http://www.ebi.ac.uk/pdbsum/1dz0 PDBsum]</span></td></tr>
<table>
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dz/1dz0_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Crystallographic structures of oxidized and reduced forms of azurin II are reported at 1.75 A resolution. Data were collected using one crystal in each case and by translating the crystal after each oscillation range to minimize photoreduction. Very small differences are observed at the Cu site upon reduction and these cannot be determined with confidence at current resolution. A comparison with the three-dimensional EXAFS reveals a good correspondence for all the ligand distances except for Cu-His46, where a larger deviation of approximately 0.12-0.18 A is observed, indicating that this ligand is more tightly restrained in the crystallographic refinement at the current resolution.


{{STRUCTURE_1dz0|  PDB=1dz0  |  SCENE=  }}
Structures of oxidized and reduced azurin II from Alcaligenes xylosoxidans at 1.75 A resolution.,Dodd FE, Abraham ZH, Eady RR, Hasnain SS Acta Crystallogr D Biol Crystallogr. 2000 Jun;56(Pt 6):690-6. PMID:10818345<ref>PMID:10818345</ref>


===REDUCED AZURIN II FROM ALCALIGENES XYLOSOXIDANS===
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
</div>
{{ABSTRACT_PUBMED_10818345}}
== References ==
 
<references/>
==About this Structure==
__TOC__
[[1dz0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Achromobacter_xylosoxidans Achromobacter xylosoxidans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DZ0 OCA].
</StructureSection>
 
==Reference==
<ref group="xtra">PMID:010818345</ref><ref group="xtra">PMID:015299774</ref><references group="xtra"/>
[[Category: Achromobacter xylosoxidans]]
[[Category: Achromobacter xylosoxidans]]
[[Category: Abraham, Z H.L.]]
[[Category: Abraham, Z H.L.]]

Revision as of 19:52, 29 September 2014

REDUCED AZURIN II FROM ALCALIGENES XYLOSOXIDANSREDUCED AZURIN II FROM ALCALIGENES XYLOSOXIDANS

Structural highlights

1dz0 is a 1 chain structure with sequence from Achromobacter xylosoxidans. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:
Related:1dyz
Resources:FirstGlance, OCA, RCSB, PDBsum

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Publication Abstract from PubMed

Crystallographic structures of oxidized and reduced forms of azurin II are reported at 1.75 A resolution. Data were collected using one crystal in each case and by translating the crystal after each oscillation range to minimize photoreduction. Very small differences are observed at the Cu site upon reduction and these cannot be determined with confidence at current resolution. A comparison with the three-dimensional EXAFS reveals a good correspondence for all the ligand distances except for Cu-His46, where a larger deviation of approximately 0.12-0.18 A is observed, indicating that this ligand is more tightly restrained in the crystallographic refinement at the current resolution.

Structures of oxidized and reduced azurin II from Alcaligenes xylosoxidans at 1.75 A resolution.,Dodd FE, Abraham ZH, Eady RR, Hasnain SS Acta Crystallogr D Biol Crystallogr. 2000 Jun;56(Pt 6):690-6. PMID:10818345[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

  1. Dodd FE, Abraham ZH, Eady RR, Hasnain SS. Structures of oxidized and reduced azurin II from Alcaligenes xylosoxidans at 1.75 A resolution. Acta Crystallogr D Biol Crystallogr. 2000 Jun;56(Pt 6):690-6. PMID:10818345

1dz0, resolution 1.75Å

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