1cql: Difference between revisions
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
[[Image:1cql.gif|left|200px]] | [[Image:1cql.gif|left|200px]] | ||
'''NMR STRUCTURE OF SRP RNA DOMAIN IV''' | {{Structure | ||
|PDB= 1cql |SIZE=350|CAPTION= <scene name='initialview01'>1cql</scene> | |||
|SITE= | |||
|LIGAND= | |||
|ACTIVITY= | |||
|GENE= | |||
}} | |||
'''NMR STRUCTURE OF SRP RNA DOMAIN IV''' | |||
==Overview== | ==Overview== | ||
| Line 7: | Line 16: | ||
==About this Structure== | ==About this Structure== | ||
1CQL is a [ | 1CQL is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CQL OCA]. | ||
==Reference== | ==Reference== | ||
Structure of the phylogenetically most conserved domain of SRP RNA., Schmitz U, Behrens S, Freymann DM, Keenan RJ, Lukavsky P, Walter P, James TL, RNA. 1999 Nov;5(11):1419-29. PMID:[http:// | Structure of the phylogenetically most conserved domain of SRP RNA., Schmitz U, Behrens S, Freymann DM, Keenan RJ, Lukavsky P, Walter P, James TL, RNA. 1999 Nov;5(11):1419-29. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/10580470 10580470] | ||
[[Category: Escherichia coli]] | [[Category: Escherichia coli]] | ||
[[Category: Protein complex]] | [[Category: Protein complex]] | ||
| Line 22: | Line 31: | ||
[[Category: srp]] | [[Category: srp]] | ||
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 10:27:41 2008'' | ||
Revision as of 11:27, 20 March 2008
| |||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
NMR STRUCTURE OF SRP RNA DOMAIN IV
OverviewOverview
The signal recognition particle (SRP) is a phylogenetically conserved ribonucleoprotein required for cotranslational targeting of proteins to the membrane of the endoplasmic reticulum of the bacterial plasma membrane. Domain IV of SRP RNA consists of a short stem-loop structure with two internal loops that contain the most conserved nucleotides of the molecule. All known essential interactions of SRP occur in that moiety containing domain IV. The solution structure of a 43-nt RNA comprising the complete Escherichia coli domain IV was determined by multidimensional NMR and restrained molecular dynamics refinement. Our data confirm the previously determined rigid structure of a smaller subfragment containing the most conserved, symmetric internal loop A (Schmitz et al., Nat Struct Biol, 1999, 6:634-638), where all conserved nucleotides are involved in nucleotide-specific structural interactions. Asymmetric internal loop B provides a hinge in the RNA molecule; it is partially flexible, yet also uniquely structured. The longer strand of internal loop B extends the major groove by creating a ledge-like arrangement; for loop B however, there is no obvious structural role for the conserved nucleotides. The structure of domain IV suggests that loop A is the initial site for the RNA/protein interaction creating specificity, whereas loop B provides a secondary interaction site.
About this StructureAbout this Structure
1CQL is a Protein complex structure of sequences from Escherichia coli. Full crystallographic information is available from OCA.
ReferenceReference
Structure of the phylogenetically most conserved domain of SRP RNA., Schmitz U, Behrens S, Freymann DM, Keenan RJ, Lukavsky P, Walter P, James TL, RNA. 1999 Nov;5(11):1419-29. PMID:10580470
Page seeded by OCA on Thu Mar 20 10:27:41 2008