4d0z: Difference between revisions

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'''Unreleased structure'''
==GalNAc-T2 crystal soaked with UDP-5SGalNAc, mEA2 and manganese (Higher resolution dataset)==
 
<StructureSection load='4d0z' size='340' side='right' caption='[[4d0z]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
The entry 4d0z is ON HOLD
== Structural highlights ==
 
<table><tr><td colspan='2'>[[4d0z]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4D0Z OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4D0Z FirstGlance]. <br>
Authors: Lira-Navarrete, E., Iglesias-Fernandez, J., Zandberg, W.F., Companon, I., Kong, Y., Corzana, F., Pinto, B.M., Clausen, H., Peregrina, J.M., Vocadlo, D., Rovira, C., Hurtado-Guerrero, R.
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BBK:2-(ACETYLAMINO)-2-DEOXY-5-THIO-ALPHA-D-GALACTOPYRANOSE'>BBK</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=HWU:(2R,3R,4R,5R,6R)-3-(ACETYLAMINO)-4,5-DIHYDROXY-6-(HYDROXYMETHYL)TETRAHYDRO-2H-THIOPYRAN-2-YL+[(2R,3S,4R,5R)-5-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL+DIHYDROGEN+DIPHOSPHATE'>HWU</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene><br>
 
<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4d0t|4d0t]], [[4d11|4d11]]</td></tr>
Description: GalNAc-T2 crystal soaked with UDP-5SGalNAc, mEA2 and manganese ( Higher resolution dataset)
<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Polypeptide_N-acetylgalactosaminyltransferase Polypeptide N-acetylgalactosaminyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.41 2.4.1.41] </span></td></tr>
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4d0z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4d0z OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4d0z RCSB], [http://www.ebi.ac.uk/pdbsum/4d0z PDBsum]</span></td></tr>
<table>
__TOC__
</StructureSection>
[[Category: Polypeptide N-acetylgalactosaminyltransferase]]
[[Category: Clausen, H.]]
[[Category: Companon, I.]]
[[Category: Corzana, F.]]
[[Category: Hurtado-Guerrero, R.]]
[[Category: Iglesias-Fernandez, J.]]
[[Category: Kong, Y.]]
[[Category: Lira-Navarrete, E.]]
[[Category: Peregrina, J M.]]
[[Category: Pinto, B M.]]
[[Category: Rovira, C.]]
[[Category: Vocadlo, D.]]
[[Category: Zandberg, W F.]]
[[Category: Acetamido group]]
[[Category: Bi-bi kinetic mechanism]]
[[Category: Qm/mm metadynamic]]
[[Category: Retaining galnac-t2]]
[[Category: Substrate specificity]]
[[Category: Substrate-guided sni-type reaction]]
[[Category: Transferase-peptide complex]]

Revision as of 13:00, 28 May 2014

GalNAc-T2 crystal soaked with UDP-5SGalNAc, mEA2 and manganese (Higher resolution dataset)GalNAc-T2 crystal soaked with UDP-5SGalNAc, mEA2 and manganese (Higher resolution dataset)

Structural highlights

4d0z is a 8 chain structure. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:, , ,
Related:4d0t, 4d11
Activity:Polypeptide N-acetylgalactosaminyltransferase, with EC number 2.4.1.41
Resources:FirstGlance, OCA, RCSB, PDBsum

4d0z, resolution 2.20Å

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OCA
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