Riboswitch: Difference between revisions
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==3D structures of riboswitch== | ==3D structures of riboswitch== | ||
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} | |||
===Adenine riboswitch=== | ===Adenine riboswitch=== | ||
[[1y26]] – AR + adenine – Vibrio vulnificus<br /> | [[1y26]] – AR + adenine – ''Vibrio vulnificus''<br /> | ||
[[3ivn]] – BsAR (mutant) – Bacillus subtilis<br /> | [[3ivn]] – BsAR (mutant) – ''Bacillus subtilis''<br /> | ||
[[3la5]] - BsAR (mutant) + azacytosine<br /> | [[3la5]] - BsAR (mutant) + azacytosine<br /> | ||
===Guanine riboswitch=== | ===Guanine riboswitch=== | ||
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[[2ees]], [[2eet]], [[2eeu]], [[2eev]], [[2eew]] - BsGR (mutant) + hypoxanthine<br /> | [[2ees]], [[2eet]], [[2eeu]], [[2eev]], [[2eew]] - BsGR (mutant) + hypoxanthine<br /> | ||
[[3gao]] - BsGR + xanthine<br /> | [[3gao]] - BsGR + xanthine<br /> | ||
[[2xnw]] – BsGR + Mn | [[2xnw]] – BsGR + Mn<br /> | ||
[[4fe5]], [[4fej]], [[4fel]], [[4fen]], [[4feo]], [[4fep]] – GR + hypoxanthine – synthetic<br /> | |||
===Thiamine pyrophosphate riboswitch=== | ===Thiamine pyrophosphate riboswitch=== | ||
[[2gdi]] – TPPR + TPP – synthetic<br /> | [[2gdi]] – TPPR + TPP – synthetic<br /> | ||
[[2hoj]], [[2hok]], [[2hol]] – EcTPPR + TPP + metal ion – Escherichia coli<br /> | [[2hoj]], [[2hok]], [[2hol]] – EcTPPR + TPP + metal ion – ''Escherichia coli''<br /> | ||
[[2hom]] – EcTPPR + TMP<br /> | [[2hom]] – EcTPPR + TMP<br /> | ||
[[2hoo]], [[2hop]] – EcTPPR + TPP analog<br /> | [[2hoo]], [[2hop]] – EcTPPR + TPP analog<br /> | ||
[[3d2g]], [[3d2v]], [[3d2x]] - TPPR + TPP analog – Arabidopsis thaliana | [[3d2g]], [[3d2v]], [[3d2x]] - TPPR + TPP analog – ''Arabidopsis thaliana'' | ||
===S-adenosylmethionine riboswitch=== | ===S-adenosylmethionine riboswitch=== | ||
[[2gis]] – TtSAMR + SAM – Thermoanaerobacter tengcongensis<br /> | [[2gis]], [[4aob]], [[4b5r]] – TtSAMR + SAM – ''Thermoanaerobacter tengcongensis''<br /> | ||
[[3iqr]], [[2ydh]], [[2ygh]] - TtSAMR (mutant) + SAM<br /> | [[3iqr]], [[2ydh]], [[2ygh]] - TtSAMR (mutant) + SAM<br /> | ||
[[3iqp]] - TtSAMR<br /> | [[3iqp]] - TtSAMR<br /> | ||
[[2qwy]], [[3e5c]], [[3e5e]], [[3e5f]], [[3iqn]] - SAMR + SAM – synthetic<br /> | [[2qwy]], [[3e5c]], [[3e5e]], [[3e5f]], [[3iqn]] - SAMR + SAM – synthetic<br /> | ||
[[4kqy]] – BsSAMR + SAM<br /> | |||
===S-adenosylhomocysteine riboswitch=== | ===S-adenosylhomocysteine riboswitch=== | ||
[[3npn]], [[3npq]] – SAHR + SAH – Ralstonia solanacearum<br /> | [[3npn]], [[3npq]] – SAHR + SAH – ''Ralstonia solanacearum''<br /> | ||
===Lysine riboswitch=== | ===Lysine riboswitch=== | ||
[[3d0u]] – | [[3d0u]] – TmKR ligand-binding domain + Lysine – ''Thermotoga maritima''<br /> | ||
[[4erj]] – TmKR + aminocaproic acid<br /> | |||
[[4erl]] – TmKR + Lys + Gly<br /> | |||
===FMN riboswitch=== | ===FMN riboswitch=== | ||
[[3f2q]], [[3f2t]], [[3f2w]], [[3f2x]], [[3f2y]], [[3f30]], [[3f4e]] – FnFMNR + FMN – Fusobacterium nucleatum<br /> | [[3f2q]], [[3f2t]], [[3f2w]], [[3f2x]], [[3f2y]], [[3f30]], [[3f4e]] – FnFMNR + FMN – ''Fusobacterium nucleatum''<br /> | ||
[[2yie]] - FnFMNR aptamer domain + FMN<br /> | [[2yie]] - FnFMNR aptamer domain + FMN<br /> | ||
[[3f4g]], [[3f4h]] – FnFMNR + flavin derivative<br /> | [[3f4g]], [[3f4h]] – FnFMNR + flavin derivative<br /> | ||
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[[3gca]] – TtQ0R + queosine<br /> | [[3gca]] – TtQ0R + queosine<br /> | ||
[[3q50]], [[3q51]] – TtQ1R aptamer domain + queosine<br /> | [[3q50]], [[3q51]] – TtQ1R aptamer domain + queosine<br /> | ||
[[4jf2]] – Q1R + GTP + deaza-aminomethyl guanine – ''Lactobacillus rhamnosus''<br /> | |||
===C-di-GMP riboswitch=== | ===C-di-GMP riboswitch=== | ||
[[3irw]], [[3mxh]] – VcGMPR + C-di-GMP + GTP + U1 small nuclear ribonucleoprotein – Vibrio cholerae<br /> | [[3irw]], [[3mxh]] – VcGMPR + C-di-GMP + GTP + U1 small nuclear ribonucleoprotein – ''Vibrio cholerae''<br /> | ||
[[3iwn]] – VcGMPR + C-di-GMP + U1 small nuclear ribonucleoprotein<br /> | [[3iwn]] – VcGMPR + C-di-GMP + U1 small nuclear ribonucleoprotein<br /> | ||
[[3mum]], [[3mur]], [[3mut]] - VcGMPR (mutant) + C-di-GMP + U1 small nuclear ribonucleoprotein<br /> | [[3mum]], [[3mur]], [[3mut]] - VcGMPR (mutant) + C-di-GMP + U1 small nuclear ribonucleoprotein<br /> | ||
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[[3p49]] – FnGlyR + U1 small nuclear ribonucleoprotein + glycine<br /> | [[3p49]] – FnGlyR + U1 small nuclear ribonucleoprotein + glycine<br /> | ||
===M-Box riboswitch=== | ===M-Box riboswitch=== | ||
[[3pdr]] – BsMBR + Mn | [[3pdr]] – BsMBR + Mn<br /> | ||
===T-Box riboswitch=== | |||
[[4lck]] – sTBR + tRNA-Gly + ribosomal protein YBXF – synthetic<br /> | |||
[[4mgn]] – sTBR + tRNA-Gly <br /> | |||
===Tetrahydrofolate riboswitch=== | ===Tetrahydrofolate riboswitch=== | ||
[[3suh]], [[3sux]] – EsTHFR + THF derivative – Eubacterium siraeum<br /> | [[3suh]], [[3sux]] – EsTHFR + THF derivative – ''Eubacterium siraeum''<br /> | ||
[[3suy]] - EsTHFR + cytidine cyclic phosphate<br /> | [[3suy]] - EsTHFR + cytidine cyclic phosphate<br /> | ||
[[3sd1]] – THFR + pteridine derivative – synthetic<br /> | [[3sd1]] – THFR + pteridine derivative – synthetic<br /> | ||
[[3sd3]] – THFR (mutant) + pteridine derivative – synthetic<br /> | [[3sd3]] – THFR (mutant) + pteridine derivative – synthetic<br /> | ||
===Fluoride riboswitch=== | |||
[[3vrs]] – TpR + Mn + K + F – ''Thermotoga petrophila''<br /> | |||
[[4en5]] – TpR + Mg + Tl + F <br /> | |||
[[4enc]] – TpR + Mg + K + F <br /> | |||
[[4ena]] – TpR + Mg + Cs + GTP + F <br /> | |||
[[4enb]] – TpR + Mg + Ir + K + GTP + F <br /> | |||
===Cobalamine riboswitch=== | |||
[[4frg]], [[4frn]], [[4gma]], [[4gxy]] – CoR + aptamer domain – ''Marine metagenome''<br /> | |||
[[Category: Topic Page]] | |||