2q7h: Difference between revisions
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[[Image:2q7h.gif|left|200px]]<br /><applet load="2q7h" size="350" color="white" frame="true" align="right" spinBox="true" | [[Image:2q7h.gif|left|200px]]<br /><applet load="2q7h" size="350" color="white" frame="true" align="right" spinBox="true" | ||
caption="2q7h, resolution 2.10Å" /> | caption="2q7h, resolution 2.10Å" /> | ||
''' | '''Pyrrolysyl-tRNA synthetase bound to adenylated pyrrolysine and pyrophosphate'''<br /> | ||
==Overview== | ==Overview== | ||
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==About this Structure== | ==About this Structure== | ||
2Q7H is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Methanosarcina_mazei Methanosarcina mazei] with <scene name='pdbligand=EDO:'>EDO</scene>, <scene name='pdbligand=YLY:'>YLY</scene> and <scene name='pdbligand=POP:'>POP</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Q7H OCA]. | 2Q7H is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Methanosarcina_mazei Methanosarcina mazei] with <scene name='pdbligand=EDO:'>EDO</scene>, <scene name='pdbligand=YLY:'>YLY</scene> and <scene name='pdbligand=POP:'>POP</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Known structural/functional Sites: <scene name='pdbsite=AC1:Edo+Binding+Site+For+Residue+A+902'>AC1</scene>, <scene name='pdbsite=AC2:Edo+Binding+Site+For+Residue+A+903'>AC2</scene>, <scene name='pdbsite=AC3:Edo+Binding+Site+For+Residue+A+904'>AC3</scene>, <scene name='pdbsite=AC4:Edo+Binding+Site+For+Residue+A+905'>AC4</scene>, <scene name='pdbsite=AC5:Edo+Binding+Site+For+Residue+A+906'>AC5</scene>, <scene name='pdbsite=AC6:Edo+Binding+Site+For+Residue+A+907'>AC6</scene>, <scene name='pdbsite=AC7:Edo+Binding+Site+For+Residue+A+908'>AC7</scene>, <scene name='pdbsite=AC8:Edo+Binding+Site+For+Residue+A+909'>AC8</scene>, <scene name='pdbsite=AC9:Edo+Binding+Site+For+Residue+A+910'>AC9</scene>, <scene name='pdbsite=BC1:Edo+Binding+Site+For+Residue+A+911'>BC1</scene>, <scene name='pdbsite=BC2:Yly+Binding+Site+For+Residue+A+900'>BC2</scene> and <scene name='pdbsite=BC3:Pop+Binding+Site+For+Residue+A+901'>BC3</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Q7H OCA]. | ||
==Reference== | ==Reference== | ||
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[[Category: POP]] | [[Category: POP]] | ||
[[Category: YLY]] | [[Category: YLY]] | ||
[[Category: ligase]] | |||
[[Category: pyrrolysine]] | [[Category: pyrrolysine]] | ||
[[Category: pyrrolysyl-trna synthetase]] | [[Category: pyrrolysyl-trna synthetase]] | ||
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 5 13:25:41 2008'' | ||
Revision as of 14:25, 5 March 2008
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Pyrrolysyl-tRNA synthetase bound to adenylated pyrrolysine and pyrophosphate
OverviewOverview
Pyrrolysine (Pyl), the 22nd natural amino acid and genetically encoded by UAG, becomes attached to its cognate tRNA by pyrrolysyl-tRNA synthetase (PylRS). We have determined three crystal structures of the Methanosarcina mazei PylRS complexed with either AMP-PNP, Pyl-AMP plus pyrophosphate, or the Pyl analogue N-epsilon-[(cylopentyloxy)carbonyl]-L-lysine plus ATP. The structures reveal that PylRS utilizes a deep hydrophobic pocket for recognition of the Pyl side chain. A comparison of these structures with previously determined class II tRNA synthetase complexes illustrates that different substrate specificities derive from changes in a small number of residues that form the substrate side-chain-binding pocket. The knowledge of these structures allowed the placement of PylRS in the aminoacyl-tRNA synthetase (aaRS) tree as the last known synthetase that evolved for genetic code expansion, as well as the finding that Pyl arose before the last universal common ancestral state. The PylRS structure provides an excellent framework for designing new aaRSs with altered amino acid specificity.
About this StructureAbout this Structure
2Q7H is a Single protein structure of sequence from Methanosarcina mazei with , and as ligands. Known structural/functional Sites: , , , , , , , , , , and . Full crystallographic information is available from OCA.
ReferenceReference
Structure of pyrrolysyl-tRNA synthetase, an archaeal enzyme for genetic code innovation., Kavran JM, Gundllapalli S, O'Donoghue P, Englert M, Soll D, Steitz TA, Proc Natl Acad Sci U S A. 2007 Jul 3;104(27):11268-73. Epub 2007 Jun 25. PMID:17592110
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