7upj: Difference between revisions

New page: left|200px<br /> <applet load="7upj" size="450" color="white" frame="true" align="right" spinBox="true" caption="7upj, resolution 2.0Å" /> '''HIV-1 PROTEASE/U1019...
 
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[[Image:7upj.gif|left|200px]]<br />
[[Image:7upj.gif|left|200px]]<br /><applet load="7upj" size="350" color="white" frame="true" align="right" spinBox="true"  
<applet load="7upj" size="450" color="white" frame="true" align="right" spinBox="true"  
caption="7upj, resolution 2.0&Aring;" />
caption="7upj, resolution 2.0&Aring;" />
'''HIV-1 PROTEASE/U101935 COMPLEX'''<br />
'''HIV-1 PROTEASE/U101935 COMPLEX'''<br />


==Overview==
==Overview==
Recently, cyclooctylpyranone derivatives with m-carboxamide substituents, (e.g. 2c) were identified as potent, nonpeptidic HIV protease inhibitors, but these compounds lacked significant antiviral activity in cell culture., Substitution of a sulfonamide group at the meta position, however, produces compounds with excellent HIV protease binding affinity and, antiviral activity. Guided by an iterative structure-based drug design, process, we have prepared and evaluated a number of these derivatives, which are readily available via a seven-step synthesis. A few of the most, potent compounds were further evaluated for such characteristics as, pharmacokinetics and toxicity in rats and dogs. From this work, the, p-cyanophenyl sulfonamide derivative 35k emerged as a promising inhibitor, was selected for further development, and entered phase I clinical trials.
Recently, cyclooctylpyranone derivatives with m-carboxamide substituents (e.g. 2c) were identified as potent, nonpeptidic HIV protease inhibitors, but these compounds lacked significant antiviral activity in cell culture. Substitution of a sulfonamide group at the meta position, however, produces compounds with excellent HIV protease binding affinity and antiviral activity. Guided by an iterative structure-based drug design process, we have prepared and evaluated a number of these derivatives, which are readily available via a seven-step synthesis. A few of the most potent compounds were further evaluated for such characteristics as pharmacokinetics and toxicity in rats and dogs. From this work, the p-cyanophenyl sulfonamide derivative 35k emerged as a promising inhibitor, was selected for further development, and entered phase I clinical trials.


==About this Structure==
==About this Structure==
7UPJ is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Human_immunodeficiency_virus_1 Human immunodeficiency virus 1] with INU as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/HIV-1_retropepsin HIV-1 retropepsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.23.16 3.4.23.16] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=7UPJ OCA].  
7UPJ is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Human_immunodeficiency_virus_1 Human immunodeficiency virus 1] with <scene name='pdbligand=INU:'>INU</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/HIV-1_retropepsin HIV-1 retropepsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.23.16 3.4.23.16] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7UPJ OCA].  


==Reference==
==Reference==
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[[Category: Human immunodeficiency virus 1]]
[[Category: Human immunodeficiency virus 1]]
[[Category: Single protein]]
[[Category: Single protein]]
[[Category: Janakiraman, M.N.]]
[[Category: Janakiraman, M N.]]
[[Category: Watenpaugh, K.D.]]
[[Category: Watenpaugh, K D.]]
[[Category: INU]]
[[Category: INU]]
[[Category: acid protease]]
[[Category: acid protease]]
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[[Category: hydrolase]]
[[Category: hydrolase]]


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