2sta: Difference between revisions

Revision as of 19:49, 21 February 2008

ANIONIC SALMON TRYPSIN IN COMPLEX WITH SQUASH SEED INHIBITOR (CUCURBITA MAXIMA TRYPSIN INHIBITOR I)

OverviewOverview

An anionic trypsin from Atlantic salmon and bovine trypsin have been complexed with the squash-seed inhibitors, CMTI-I (Cucurbita maxima trypsin inhibitor I, P1 Arg) and CPTI-II (Cucurbita pepo trypsin inhibitor II, P1 Lys). The crystal structures of three such complexes have been determined to 1.5-1.8 A resolution and refined to crystallographic R factors ranging from 17.6 to 19.3%. The two anionic salmon-trypsin complexes (ST-CPTI and ST-CMTI) and the bovine-trypsin complex (BT-CPTI) have been compared to other trypsin-inhibitor complexes by means of general structure and primary and secondary binding features. In all three new structures, the primary binding residue of the inhibitor binds to trypsin in the classical manner, but with small differences in the primary and secondary binding patterns. Lysine in CPTI-II binds deeper in the specificity pocket of bovine trypsin than lysine in other known lysine-bovine-trypsin complexes, and anionic salmon trypsin lacks some of the secondary binding interactions found in the complexes formed between squash inhibitors and bovine trypsin. The ST-CMTI complex was formed from the reactive-site-cleaved form of the inhibitor. However, well defined electron density was observed for the P1-P1' peptide bond, together with a hydrogen-bonding pattern virtually identical to those of all serine-protease-protein-inhibitor complexes, indicating a resynthesis of the scissile bond.

About this StructureAbout this Structure

2STA is a Protein complex structure of sequences from Cucurbita maxima and Salmo salar with as ligand. Active as Trypsin, with EC number 3.4.21.4 Full crystallographic information is available from OCA.

ReferenceReference

High-resolution structures of three new trypsin-squash-inhibitor complexes: a detailed comparison with other trypsins and their complexes., Helland R, Berglund GI, Otlewski J, Apostoluk W, Andersen OA, Willassen NP, Smalas AO, Acta Crystallogr D Biol Crystallogr. 1999 Jan;55(Pt 1):139-48. Epub 1999, Jan 1. PMID:10089404

Page seeded by OCA on Thu Feb 21 18:49:28 2008

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-[[Image:2sta.jpg|left|200px]]<br /><applet load="2sta" size="450" color="white" frame="true" align="right" spinBox="true"
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 caption="2sta, resolution 1.80&Aring;" />
 '''ANIONIC SALMON TRYPSIN IN COMPLEX WITH SQUASH SEED INHIBITOR (CUCURBITA MAXIMA TRYPSIN INHIBITOR I)'''<br />
 ==Overview==
-An anionic trypsin from Atlantic salmon and bovine trypsin have been, complexed with the squash-seed inhibitors, CMTI-I (Cucurbita maxima, trypsin inhibitor I, P1 Arg) and CPTI-II (Cucurbita pepo trypsin inhibitor, II, P1 Lys). The crystal structures of three such complexes have been, determined to 1.5-1.8 A resolution and refined to crystallographic R, factors ranging from 17.6 to 19.3%. The two anionic salmon-trypsin, complexes (ST-CPTI and ST-CMTI) and the bovine-trypsin complex (BT-CPTI), have been compared to other trypsin-inhibitor complexes by means of, general structure and primary and secondary binding features. In all three, new structures, the primary binding residue of the inhibitor binds to, trypsin in the classical manner, but with small differences in the primary, and secondary binding patterns. Lysine in CPTI-II binds deeper in the, specificity pocket of bovine trypsin than lysine in other known, lysine-bovine-trypsin complexes, and anionic salmon trypsin lacks some of, the secondary binding interactions found in the complexes formed between, squash inhibitors and bovine trypsin. The ST-CMTI complex was formed from, the reactive-site-cleaved form of the inhibitor. However, well defined, electron density was observed for the P1-P1' peptide bond, together with a, hydrogen-bonding pattern virtually identical to those of all, serine-protease-protein-inhibitor complexes, indicating a resynthesis of, the scissile bond.
+An anionic trypsin from Atlantic salmon and bovine trypsin have been complexed with the squash-seed inhibitors, CMTI-I (Cucurbita maxima trypsin inhibitor I, P1 Arg) and CPTI-II (Cucurbita pepo trypsin inhibitor II, P1 Lys). The crystal structures of three such complexes have been determined to 1.5-1.8 A resolution and refined to crystallographic R factors ranging from 17.6 to 19.3%. The two anionic salmon-trypsin complexes (ST-CPTI and ST-CMTI) and the bovine-trypsin complex (BT-CPTI) have been compared to other trypsin-inhibitor complexes by means of general structure and primary and secondary binding features. In all three new structures, the primary binding residue of the inhibitor binds to trypsin in the classical manner, but with small differences in the primary and secondary binding patterns. Lysine in CPTI-II binds deeper in the specificity pocket of bovine trypsin than lysine in other known lysine-bovine-trypsin complexes, and anionic salmon trypsin lacks some of the secondary binding interactions found in the complexes formed between squash inhibitors and bovine trypsin. The ST-CMTI complex was formed from the reactive-site-cleaved form of the inhibitor. However, well defined electron density was observed for the P1-P1' peptide bond, together with a hydrogen-bonding pattern virtually identical to those of all serine-protease-protein-inhibitor complexes, indicating a resynthesis of the scissile bond.
 ==About this Structure==
-STA is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Cucurbita_maxima Cucurbita maxima] and [http://en.wikipedia.org/wiki/Salmo_salar Salmo salar] with CA as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Trypsin Trypsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.4 3.4.21.4] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2STA OCA].
+STA is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Cucurbita_maxima Cucurbita maxima] and [http://en.wikipedia.org/wiki/Salmo_salar Salmo salar] with <scene name='pdbligand=CA:'>CA</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Trypsin Trypsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.4 3.4.21.4] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2STA OCA].
 ==Reference==
@@ Line 15: / Line 15: @@
 [[Category: Salmo salar]]
 [[Category: Trypsin]]
-[[Category: Andersen, O.A.]]
+[[Category: Andersen, O A.]]
 [[Category: Apostoluk, W.]]
-[[Category: Berglund, G.I.]]
+[[Category: Berglund, G I.]]
 [[Category: Helland, R.]]
 [[Category: Otlewski, J.]]
-[[Category: Smalas, A.O.]]
+[[Category: Smalas, A O.]]
-[[Category: Willassen, N.P.]]
+[[Category: Willassen, N P.]]
 [[Category: CA]]
 [[Category: serine proteinase]]
 [[Category: trypsin inhibitor]]
-''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 14:03:29 2007''
+''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 18:49:28 2008''