User:Wayne Decatur/4ay9 pymol: Difference between revisions
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Making images with 4ay9
In PyMol
Pages with supporting information
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<pre> | <pre> | ||
select NeedsToBeLoop, chain E and | select NeedsToBeLoop, chain E and resi 16-17 | ||
alter NeedsToBeLoop, ss='L' # assign residues 16-17 as loop | alter NeedsToBeLoop, ss='L' # assign residues 16-17 as loop | ||
rebuild | rebuild | ||
Revision as of 04:38, 5 July 2013
Making images with 4ay9Making images with 4ay9
In PyMolIn PyMol
I found that for some reason part of the structure that in the paper is represented as a loop, PyMol was making a helix. It was small and not overly noticeable but to perfect images for Stacia's slides. I wanted to deal with it.
select NeedsToBeLoop, chain E and resi 16-17 alter NeedsToBeLoop, ss='L' # assign residues 16-17 as loop rebuild
Pages with supporting informationPages with supporting information
- User:Wayne Decatur/Generate Unfolded Structures
- Pymol Posted Command Syntax and Atom Selections for PyMol
- Pymol Posted Command Syntax and Atom Selections for PyMol with 'resi' used
- Pymol Users manual page on secondary structure
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