Structure superposition tools: Difference between revisions
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Note: In order to get alignment parameters such as RMSD, you must change the list format from ''graphics'' to ''table'', then click the List button. | Note: In order to get alignment parameters such as RMSD, you must change the list format from ''graphics'' to ''table'', then click the List button. | ||
==Structure Navigator of PDB-Japan== | |||
*Server: [http://www.pdbj.org/doc/help?Structure%20Navigator Structure Navigator] | |||
*Publication (2007): [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1955748/ ASH structure alignment package: Sensitivity and selectivity in domain classification]. | |||
*Help on server: YES. | |||
*Does alignment involve sequence comparison? Yes, and the sequence alignment for each pair is displayed. | |||
*Rigid alignment: YES. | |||
*Flexible alignment: (Probably not -- unclear.) | |||
*Multiple alignment: ?? | |||
*Structure neighbors (pre-calculated): ?? | |||
*Pairwise alignment including uploaded models: YES. | |||
*Visualization: Yes, using the jV applet developed at PDBj. | |||
*Color by deviation: No? | |||
*Offered by RCSB? NO. | |||
*Special features: ?? | |||
==Structural Alignment Software== | ==Structural Alignment Software== | ||