2f5w: Difference between revisions
New page: left|200px<br /><applet load="2f5w" size="450" color="white" frame="true" align="right" spinBox="true" caption="2f5w, resolution 2.001Å" /> '''Cross-linked barnas... |
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[[Image:2f5w.gif|left|200px]]<br /><applet load="2f5w" size=" | [[Image:2f5w.gif|left|200px]]<br /><applet load="2f5w" size="350" color="white" frame="true" align="right" spinBox="true" | ||
caption="2f5w, resolution 2.001Å" /> | caption="2f5w, resolution 2.001Å" /> | ||
'''Cross-linked barnase soaked in 3 M thiourea'''<br /> | '''Cross-linked barnase soaked in 3 M thiourea'''<br /> | ||
==Overview== | ==Overview== | ||
Structural data about the early step of protein denaturation were obtained | Structural data about the early step of protein denaturation were obtained from cross-linked crystals for two small proteins: barnase and lysozyme. Several denaturant agents like urea, bromoethanol or thiourea were used at increasing concentrations up to a limit leading to crystal disruption (>or=2 to 6 M). Before the complete destruction of the crystal order started, specific binding sites were observed at the protein surfaces, an indication that the preliminary step of denaturation is the disproportion of intermolecular polar bonds to the benefit of the agent "parasiting" the surface. The analysis of the thermal factors first agree with a stabilization effect at low or moderate concentration of denaturants rapidly followed by a destabilization at specific weak points when the number of sites increase (overflooding effect). | ||
==About this Structure== | ==About this Structure== | ||
2F5W is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_amyloliquefaciens Bacillus amyloliquefaciens] with ZN and TOU as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http:// | 2F5W is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_amyloliquefaciens Bacillus amyloliquefaciens] with <scene name='pdbligand=ZN:'>ZN</scene> and <scene name='pdbligand=TOU:'>TOU</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F5W OCA]. | ||
==Reference== | ==Reference== | ||
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[[Category: urea]] | [[Category: urea]] | ||
''Page seeded by [http:// | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 17:18:04 2008'' | ||
Revision as of 18:18, 21 February 2008
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Cross-linked barnase soaked in 3 M thiourea
OverviewOverview
Structural data about the early step of protein denaturation were obtained from cross-linked crystals for two small proteins: barnase and lysozyme. Several denaturant agents like urea, bromoethanol or thiourea were used at increasing concentrations up to a limit leading to crystal disruption (>or=2 to 6 M). Before the complete destruction of the crystal order started, specific binding sites were observed at the protein surfaces, an indication that the preliminary step of denaturation is the disproportion of intermolecular polar bonds to the benefit of the agent "parasiting" the surface. The analysis of the thermal factors first agree with a stabilization effect at low or moderate concentration of denaturants rapidly followed by a destabilization at specific weak points when the number of sites increase (overflooding effect).
About this StructureAbout this Structure
2F5W is a Single protein structure of sequence from Bacillus amyloliquefaciens with and as ligands. Full crystallographic information is available from OCA.
ReferenceReference
On the edge of the denaturation process: application of X-ray diffraction to barnase and lysozyme cross-linked crystals with denaturants in molar concentrations., Salem M, Mauguen Y, Prange T, Biochim Biophys Acta. 2006 May;1764(5):903-12. Epub 2006 Mar 20. PMID:16600702
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