1yfh: Difference between revisions
New page: left|200px<br /> <applet load="1yfh" size="450" color="white" frame="true" align="right" spinBox="true" caption="1yfh, resolution 3.01Å" /> '''wt Human O6-Alkylgu... |
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[[Image:1yfh.gif|left|200px]]<br /> | [[Image:1yfh.gif|left|200px]]<br /><applet load="1yfh" size="350" color="white" frame="true" align="right" spinBox="true" | ||
<applet load="1yfh" size=" | |||
caption="1yfh, resolution 3.01Å" /> | caption="1yfh, resolution 3.01Å" /> | ||
'''wt Human O6-Alkylguanine-DNA Alkyltransferase Bound To DNA Containing an Alkylated Cytosine'''<br /> | '''wt Human O6-Alkylguanine-DNA Alkyltransferase Bound To DNA Containing an Alkylated Cytosine'''<br /> | ||
==Overview== | ==Overview== | ||
O6-Alklyguanine-DNA alkyltransferase (AGT) is an important DNA repair | O6-Alklyguanine-DNA alkyltransferase (AGT) is an important DNA repair protein that protects cells from mutagenesis and toxicity arising from alkylating agents. We present an X-ray crystal structure of the wild-type human protein (hAGT) bound to double-stranded DNA with a chemically modified cytosine base. The protein binds at two different sites: one at the modified base, and the other across a sticky-ended DNA junction. The protein molecule that binds the modified cytosine base flips the base and recognizes it in its active site. The one that binds ends of neighboring DNA molecules partially flips an overhanging thymine base. This base is not inserted into the active-site pocket of the protein. These two different hAGT/DNA interactions observed in the structure suggest that hAGT may not detect DNA lesions by searching for the adduct itself, but rather for weakened and/or distorted base-pairs caused by base damage in the duplex DNA. We propose that hAGT imposes a strain on the DNA duplex and searches for DNA regions where the native structure is destabilized. The structure provides implications for pyrimidine recognition, improved inhibitor design, and a possible protein/protein interaction patch on hAGT. | ||
==About this Structure== | ==About this Structure== | ||
1YFH is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with ZN as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Methylated-DNA--[protein]-cysteine_S-methyltransferase Methylated-DNA--[protein]-cysteine S-methyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.1.63 2.1.1.63] Full crystallographic information is available from [http:// | 1YFH is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with <scene name='pdbligand=ZN:'>ZN</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Methylated-DNA--[protein]-cysteine_S-methyltransferase Methylated-DNA--[protein]-cysteine S-methyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.1.63 2.1.1.63] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YFH OCA]. | ||
==Reference== | ==Reference== | ||
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[[Category: Methylated-DNA--[protein]-cysteine S-methyltransferase]] | [[Category: Methylated-DNA--[protein]-cysteine S-methyltransferase]] | ||
[[Category: Single protein]] | [[Category: Single protein]] | ||
[[Category: Duguid, E | [[Category: Duguid, E M.]] | ||
[[Category: He, C.]] | [[Category: He, C.]] | ||
[[Category: Rice, P | [[Category: Rice, P A.]] | ||
[[Category: ZN]] | [[Category: ZN]] | ||
[[Category: protein-dna complex]] | [[Category: protein-dna complex]] | ||
''Page seeded by [http:// | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 16:04:53 2008'' | ||
Revision as of 17:04, 21 February 2008
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wt Human O6-Alkylguanine-DNA Alkyltransferase Bound To DNA Containing an Alkylated Cytosine
OverviewOverview
O6-Alklyguanine-DNA alkyltransferase (AGT) is an important DNA repair protein that protects cells from mutagenesis and toxicity arising from alkylating agents. We present an X-ray crystal structure of the wild-type human protein (hAGT) bound to double-stranded DNA with a chemically modified cytosine base. The protein binds at two different sites: one at the modified base, and the other across a sticky-ended DNA junction. The protein molecule that binds the modified cytosine base flips the base and recognizes it in its active site. The one that binds ends of neighboring DNA molecules partially flips an overhanging thymine base. This base is not inserted into the active-site pocket of the protein. These two different hAGT/DNA interactions observed in the structure suggest that hAGT may not detect DNA lesions by searching for the adduct itself, but rather for weakened and/or distorted base-pairs caused by base damage in the duplex DNA. We propose that hAGT imposes a strain on the DNA duplex and searches for DNA regions where the native structure is destabilized. The structure provides implications for pyrimidine recognition, improved inhibitor design, and a possible protein/protein interaction patch on hAGT.
About this StructureAbout this Structure
1YFH is a Single protein structure of sequence from Homo sapiens with as ligand. Active as [protein-cysteine_S-methyltransferase Methylated-DNA--[protein]-cysteine S-methyltransferase], with EC number 2.1.1.63 Full crystallographic information is available from OCA.
ReferenceReference
The structure of the human AGT protein bound to DNA and its implications for damage detection., Duguid EM, Rice PA, He C, J Mol Biol. 2005 Jul 22;350(4):657-66. PMID:15964013 [[Category: Methylated-DNA--[protein]-cysteine S-methyltransferase]]
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