1qq9: Difference between revisions

Revision as of 15:42, 21 February 2008

STREPTOMYCES GRISEUS AMINOPEPTIDASE COMPLEXED WITH METHIONINE

OverviewOverview

SGAP is an aminopeptidase present in the extracellular fluid of Streptomyces griseus cultures. It is a double-zinc enzyme with a strong preference for large hydrophobic amino-terminus residues. It is a monomeric (30 kDa) heat-stable enzyme, with a high and efficient catalytic activity modulated by calcium ions. The small size, high activity and heat stability make SGAP a very attractive enzyme for various biotechnological applications. Only one other related aminopeptidase (Aeromonas proteolytica AP; AAP) has been structurally analyzed to date and its structure was shown to be considerably similar to SGAP, despite the low sequence homology between the two enzymes. The motivation for the detailed structural analysis of SGAP originated from a strong mechanistic interest in the family of double-zinc aminopeptidases, combined with the high potential applicability of these enzymes. The 1.75 A crystallographic structure of native SGAP has been previously reported, but did not allow critical mechanistic interpretations owing to inconclusive structural regions around the active site. A more accurate structure of SGAP at 1.58 A resolution is reported in this paper, along with the 1.53 A resolution structure of the SGAP complex with inhibitory methionine, which is also a product of the SGAP catalytic process. These two high-resolution structures enable a better understanding of the SGAP binding mode of both substrates and products. These studies allowed the tracing of the previously disordered region of the enzyme (Glu196-Arg202) and the identification of some of the functional groups of the enzyme that are involved in enzyme-substrate interactions (Asp160, Met161, Gly201, Arg202 and Phe219). These studies also suggest that Glu131 is directly involved in the catalytic mechanism of SGAP, probably as the hydrolytic nucleophile. The structural results are compared with a recent structure of AAP with an hydroxamate inhibitor in order to draw general functional conclusions which are relevant for this family of low molecular-weight aminopeptidases.

About this StructureAbout this Structure

1QQ9 is a Single protein structure of sequence from Streptomyces chryseus with , and as ligands. Full crystallographic information is available from OCA.

ReferenceReference

Interactions of Streptomyces griseus aminopeptidase with a methionine product analogue: a structural study at 1.53 A resolution., Gilboa R, Greenblatt HM, Perach M, Spungin-Bialik A, Lessel U, Wohlfahrt G, Schomburg D, Blumberg S, Shoham G, Acta Crystallogr D Biol Crystallogr. 2000 May;56(Pt 5):551-8. PMID:10771423

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-[[Image:1qq9.gif|left|200px]]<br /><applet load="1qq9" size="450" color="white" frame="true" align="right" spinBox="true"
+[[Image:1qq9.gif|left|200px]]<br /><applet load="1qq9" size="350" color="white" frame="true" align="right" spinBox="true"
 caption="1qq9, resolution 1.53&Aring;" />
 '''STREPTOMYCES GRISEUS AMINOPEPTIDASE COMPLEXED WITH METHIONINE'''<br />
 ==Overview==
-SGAP is an aminopeptidase present in the extracellular fluid of, Streptomyces griseus cultures. It is a double-zinc enzyme with a strong, preference for large hydrophobic amino-terminus residues. It is a, monomeric (30 kDa) heat-stable enzyme, with a high and efficient catalytic, activity modulated by calcium ions. The small size, high activity and heat, stability make SGAP a very attractive enzyme for various biotechnological, applications. Only one other related aminopeptidase (Aeromonas, proteolytica AP; AAP) has been structurally analyzed to date and its, structure was shown to be considerably similar to SGAP, despite the low, sequence homology between the two enzymes. The motivation for the detailed, structural analysis of SGAP originated from a strong mechanistic interest, in the family of double-zinc aminopeptidases, combined with the high, potential applicability of these enzymes. The 1.75 A crystallographic, structure of native SGAP has been previously reported, but did not allow, critical mechanistic interpretations owing to inconclusive structural, regions around the active site. A more accurate structure of SGAP at 1.58, A resolution is reported in this paper, along with the 1.53 A resolution, structure of the SGAP complex with inhibitory methionine, which is also a, product of the SGAP catalytic process. These two high-resolution, structures enable a better understanding of the SGAP binding mode of both, substrates and products. These studies allowed the tracing of the, previously disordered region of the enzyme (Glu196-Arg202) and the, identification of some of the functional groups of the enzyme that are, involved in enzyme-substrate interactions (Asp160, Met161, Gly201, Arg202, and Phe219). These studies also suggest that Glu131 is directly involved, in the catalytic mechanism of SGAP, probably as the hydrolytic, nucleophile. The structural results are compared with a recent structure, of AAP with an hydroxamate inhibitor in order to draw general functional, conclusions which are relevant for this family of low molecular-weight, aminopeptidases.
+SGAP is an aminopeptidase present in the extracellular fluid of Streptomyces griseus cultures. It is a double-zinc enzyme with a strong preference for large hydrophobic amino-terminus residues. It is a monomeric (30 kDa) heat-stable enzyme, with a high and efficient catalytic activity modulated by calcium ions. The small size, high activity and heat stability make SGAP a very attractive enzyme for various biotechnological applications. Only one other related aminopeptidase (Aeromonas proteolytica AP; AAP) has been structurally analyzed to date and its structure was shown to be considerably similar to SGAP, despite the low sequence homology between the two enzymes. The motivation for the detailed structural analysis of SGAP originated from a strong mechanistic interest in the family of double-zinc aminopeptidases, combined with the high potential applicability of these enzymes. The 1.75 A crystallographic structure of native SGAP has been previously reported, but did not allow critical mechanistic interpretations owing to inconclusive structural regions around the active site. A more accurate structure of SGAP at 1.58 A resolution is reported in this paper, along with the 1.53 A resolution structure of the SGAP complex with inhibitory methionine, which is also a product of the SGAP catalytic process. These two high-resolution structures enable a better understanding of the SGAP binding mode of both substrates and products. These studies allowed the tracing of the previously disordered region of the enzyme (Glu196-Arg202) and the identification of some of the functional groups of the enzyme that are involved in enzyme-substrate interactions (Asp160, Met161, Gly201, Arg202 and Phe219). These studies also suggest that Glu131 is directly involved in the catalytic mechanism of SGAP, probably as the hydrolytic nucleophile. The structural results are compared with a recent structure of AAP with an hydroxamate inhibitor in order to draw general functional conclusions which are relevant for this family of low molecular-weight aminopeptidases.
 ==About this Structure==
-QQ9 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Streptomyces_chryseus Streptomyces chryseus] with ZN, CA and MET as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1QQ9 OCA].
+QQ9 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Streptomyces_chryseus Streptomyces chryseus] with <scene name='pdbligand=ZN:'>ZN</scene>, <scene name='pdbligand=CA:'>CA</scene> and <scene name='pdbligand=MET:'>MET</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QQ9 OCA].
 ==Reference==
@@ Line 15: / Line 15: @@
 [[Category: Blumberg, S.]]
 [[Category: Gilboa, R.]]
-[[Category: Greenblatt, H.M.]]
+[[Category: Greenblatt, H M.]]
 [[Category: Lessel, U.]]
 [[Category: Perach, M.]]
@@ Line 28: / Line 28: @@
 [[Category: protein-inhibitor complex]]
-''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 00:53:18 2007''
+''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 14:42:32 2008''