1p5b: Difference between revisions
New page: left|200px<br /><applet load="1p5b" size="450" color="white" frame="true" align="right" spinBox="true" caption="1p5b, resolution 1.35Å" /> '''High Resolution Stru... |
No edit summary |
||
| Line 1: | Line 1: | ||
[[Image:1p5b.jpg|left|200px]]<br /><applet load="1p5b" size=" | [[Image:1p5b.jpg|left|200px]]<br /><applet load="1p5b" size="350" color="white" frame="true" align="right" spinBox="true" | ||
caption="1p5b, resolution 1.35Å" /> | caption="1p5b, resolution 1.35Å" /> | ||
'''High Resolution Structure of Reduced Active Mutant of (S)-Mandelate Dehydrogenase'''<br /> | '''High Resolution Structure of Reduced Active Mutant of (S)-Mandelate Dehydrogenase'''<br /> | ||
==Overview== | ==Overview== | ||
The crystal structures of a soluble mutant of the flavoenzyme mandelate | The crystal structures of a soluble mutant of the flavoenzyme mandelate dehydrogenase (MDH) from Pseudomonas putida and of the substrate-reduced enzyme have been analyzed at 1.35-A resolution. The mutant (MDH-GOX2) is a fully active chimeric enzyme in which residues 177-215 of the membrane-bound MDH are replaced by residues 176-195 of glycolate oxidase from spinach. Both structures permit full tracing of the polypeptide backbone chain from residues 4-356, including a 4-residue segment that was disordered in an earlier study of the oxidized protein at 2.15 A resolution. The structures of MDH-GOX2 in the oxidized and reduced states are virtually identical with only a slight increase in the bending angle of the flavin ring upon reduction. The only other structural changes within the protein interior are a 10 degrees rotation of an active site tyrosine side chain, the loss of an active site water, and a significant movement of six other water molecules in the active site by 0.45 to 0.78 A. Consistent with solution studies, there is no apparent binding of either the substrate, mandelate, or the oxidation product, benzoylformate, to the reduced enzyme. The observed structural changes upon enzyme reduction have been interpreted as a rearrangement of the hydrogen bonding pattern within the active site that results from binding of a proton to the N-5 position of the anionic hydroquinone form of the reduced flavin prosthetic group. Implications for the low oxidase activity of the reduced enzyme are also discussed. | ||
==About this Structure== | ==About this Structure== | ||
1P5B is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_putida Pseudomonas putida] with SO4, FMN and MES as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http:// | 1P5B is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_putida Pseudomonas putida] with <scene name='pdbligand=SO4:'>SO4</scene>, <scene name='pdbligand=FMN:'>FMN</scene> and <scene name='pdbligand=MES:'>MES</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1P5B OCA]. | ||
==Reference== | ==Reference== | ||
| Line 13: | Line 13: | ||
[[Category: Pseudomonas putida]] | [[Category: Pseudomonas putida]] | ||
[[Category: Single protein]] | [[Category: Single protein]] | ||
[[Category: Mathews, F | [[Category: Mathews, F S.]] | ||
[[Category: Mitra, B.]] | [[Category: Mitra, B.]] | ||
[[Category: Sukumar, N.]] | [[Category: Sukumar, N.]] | ||
| Line 22: | Line 22: | ||
[[Category: tim barrel]] | [[Category: tim barrel]] | ||
''Page seeded by [http:// | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 14:25:17 2008'' | ||
Revision as of 15:25, 21 February 2008
|
High Resolution Structure of Reduced Active Mutant of (S)-Mandelate Dehydrogenase
OverviewOverview
The crystal structures of a soluble mutant of the flavoenzyme mandelate dehydrogenase (MDH) from Pseudomonas putida and of the substrate-reduced enzyme have been analyzed at 1.35-A resolution. The mutant (MDH-GOX2) is a fully active chimeric enzyme in which residues 177-215 of the membrane-bound MDH are replaced by residues 176-195 of glycolate oxidase from spinach. Both structures permit full tracing of the polypeptide backbone chain from residues 4-356, including a 4-residue segment that was disordered in an earlier study of the oxidized protein at 2.15 A resolution. The structures of MDH-GOX2 in the oxidized and reduced states are virtually identical with only a slight increase in the bending angle of the flavin ring upon reduction. The only other structural changes within the protein interior are a 10 degrees rotation of an active site tyrosine side chain, the loss of an active site water, and a significant movement of six other water molecules in the active site by 0.45 to 0.78 A. Consistent with solution studies, there is no apparent binding of either the substrate, mandelate, or the oxidation product, benzoylformate, to the reduced enzyme. The observed structural changes upon enzyme reduction have been interpreted as a rearrangement of the hydrogen bonding pattern within the active site that results from binding of a proton to the N-5 position of the anionic hydroquinone form of the reduced flavin prosthetic group. Implications for the low oxidase activity of the reduced enzyme are also discussed.
About this StructureAbout this Structure
1P5B is a Single protein structure of sequence from Pseudomonas putida with , and as ligands. Full crystallographic information is available from OCA.
ReferenceReference
High resolution structures of an oxidized and reduced flavoprotein. The water switch in a soluble form of (S)-mandelate dehydrogenase., Sukumar N, Dewanti AR, Mitra B, Mathews FS, J Biol Chem. 2004 Jan 30;279(5):3749-57. Epub 2003 Nov 6. PMID:14604988
Page seeded by OCA on Thu Feb 21 14:25:17 2008