1oio: Difference between revisions
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==Overview== | ==Overview== | ||
GafD in Escherichia coli G (F17) fimbriae is associated with diarrheal | GafD in Escherichia coli G (F17) fimbriae is associated with diarrheal disease, and the structure of the ligand-binding domain, GafD1-178, has been determined at 1.7A resolution in the presence of the receptor sugar N-acetyl-D-glucosamine. The overall fold is a beta-barrel jelly-roll fold. The ligand-binding site was identified and localized to the side of the molecule. Receptor binding is mediated by side-chain as well main-chain interactions. Ala43-Asn44, Ser116-Thr117 form the sugar acetamide specificity pocket, while Asp88 confers tight binding and Trp109 appears to position the ligand. There is a disulfide bond that rigidifies the acetamide specificity pocket. The three fimbrial lectins, GafD, FimH and PapG share similar beta-barrel folds but display different ligand-binding regions and disulfide-bond patterns. We suggest an evolutionary path for the evolution of the very diverse fimbrial lectins from a common ancestral fold. | ||
==About this Structure== | ==About this Structure== | ||
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[[Category: Edelman, S.]] | [[Category: Edelman, S.]] | ||
[[Category: Goldman, A.]] | [[Category: Goldman, A.]] | ||
[[Category: Korhonen, T | [[Category: Korhonen, T K.]] | ||
[[Category: Merckel, M | [[Category: Merckel, M C.]] | ||
[[Category: Tanskanen, J.]] | [[Category: Tanskanen, J.]] | ||
[[Category: Westerlund-Wikstrom, B.]] | [[Category: Westerlund-Wikstrom, B.]] | ||
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[[Category: n-acetyl-d-glucosamine binding]] | [[Category: n-acetyl-d-glucosamine binding]] | ||
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 14:18:13 2008'' | ||
Revision as of 15:18, 21 February 2008
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GAFD (F17C-TYPE) FIMBRIAL ADHESIN FROM ESCHERICHIA COLI
OverviewOverview
GafD in Escherichia coli G (F17) fimbriae is associated with diarrheal disease, and the structure of the ligand-binding domain, GafD1-178, has been determined at 1.7A resolution in the presence of the receptor sugar N-acetyl-D-glucosamine. The overall fold is a beta-barrel jelly-roll fold. The ligand-binding site was identified and localized to the side of the molecule. Receptor binding is mediated by side-chain as well main-chain interactions. Ala43-Asn44, Ser116-Thr117 form the sugar acetamide specificity pocket, while Asp88 confers tight binding and Trp109 appears to position the ligand. There is a disulfide bond that rigidifies the acetamide specificity pocket. The three fimbrial lectins, GafD, FimH and PapG share similar beta-barrel folds but display different ligand-binding regions and disulfide-bond patterns. We suggest an evolutionary path for the evolution of the very diverse fimbrial lectins from a common ancestral fold.
About this StructureAbout this Structure
1OIO is a Single protein structure of sequence from Escherichia coli with as ligand. Known structural/functional Site: . Full crystallographic information is available from OCA.
ReferenceReference
The structural basis of receptor-binding by Escherichia coli associated with diarrhea and septicemia., Merckel MC, Tanskanen J, Edelman S, Westerlund-Wikstrom B, Korhonen TK, Goldman A, J Mol Biol. 2003 Aug 22;331(4):897-905. PMID:12909017
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