1jqv: Difference between revisions
New page: left|200px<br /><applet load="1jqv" size="450" color="white" frame="true" align="right" spinBox="true" caption="1jqv, resolution 2.1Å" /> '''The K213E mutant of L... |
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[[Image:1jqv.jpg|left|200px]]<br /><applet load="1jqv" size=" | [[Image:1jqv.jpg|left|200px]]<br /><applet load="1jqv" size="350" color="white" frame="true" align="right" spinBox="true" | ||
caption="1jqv, resolution 2.1Å" /> | caption="1jqv, resolution 2.1Å" /> | ||
'''The K213E mutant of Lactococcus lactis Dihydroorotate dehydrogenase A'''<br /> | '''The K213E mutant of Lactococcus lactis Dihydroorotate dehydrogenase A'''<br /> | ||
==Overview== | ==Overview== | ||
Dihydroorotate dehydrogenases (DHODs) are flavoenzymes catalyzing the | Dihydroorotate dehydrogenases (DHODs) are flavoenzymes catalyzing the oxidation of (S)-dihydroorotate to orotate in the biosynthesis of UMP, the precursor of all other pyrimidine nucleotides. On the basis of sequence, DHODs can be divided into two classes, class 1, further divided in subclasses 1A and 1B, and class 2. This division corresponds to differences in cellular location and the nature of the electron acceptor. Herein we report a study of Lactococcus lactis DHODA, a representative of the class 1A enzymes. Based on the DHODA structure we selected seven residues that are highly conserved between both main classes of DHODs as well as three residues representing surface charges close to the active site for site-directed mutagenesis. The availability of both kinetic and structural data on the mutant enzymes allowed us to define the roles individual structural segments play in catalysis. We have also structurally proven the presence of an open active site loop in DHODA and obtained information about the interactions that control movements of loops around the active site. Furthermore, in one mutant structure we observed differences between the two monomers of the dimer, confirming an apparent asymmetry between the two substrate binding sites that was indicated by the kinetic results. | ||
==About this Structure== | ==About this Structure== | ||
1JQV is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Lactococcus_lactis Lactococcus lactis] with MG, FMN, ORO and ACY as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Dihydroorotate_oxidase Dihydroorotate oxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.3.3.1 1.3.3.1] Full crystallographic information is available from [http:// | 1JQV is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Lactococcus_lactis Lactococcus lactis] with <scene name='pdbligand=MG:'>MG</scene>, <scene name='pdbligand=FMN:'>FMN</scene>, <scene name='pdbligand=ORO:'>ORO</scene> and <scene name='pdbligand=ACY:'>ACY</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Dihydroorotate_oxidase Dihydroorotate oxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.3.3.1 1.3.3.1] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JQV OCA]. | ||
==Reference== | ==Reference== | ||
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[[Category: Arent, S.]] | [[Category: Arent, S.]] | ||
[[Category: Bjornberg, O.]] | [[Category: Bjornberg, O.]] | ||
[[Category: Jensen, K | [[Category: Jensen, K F.]] | ||
[[Category: Larsen, S.]] | [[Category: Larsen, S.]] | ||
[[Category: Leggio, L | [[Category: Leggio, L Lo.]] | ||
[[Category: Norager, S.]] | [[Category: Norager, S.]] | ||
[[Category: Ottosen, M.]] | [[Category: Ottosen, M.]] | ||
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[[Category: orotate complex]] | [[Category: orotate complex]] | ||
''Page seeded by [http:// | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 13:25:47 2008'' | ||
Revision as of 14:25, 21 February 2008
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The K213E mutant of Lactococcus lactis Dihydroorotate dehydrogenase A
OverviewOverview
Dihydroorotate dehydrogenases (DHODs) are flavoenzymes catalyzing the oxidation of (S)-dihydroorotate to orotate in the biosynthesis of UMP, the precursor of all other pyrimidine nucleotides. On the basis of sequence, DHODs can be divided into two classes, class 1, further divided in subclasses 1A and 1B, and class 2. This division corresponds to differences in cellular location and the nature of the electron acceptor. Herein we report a study of Lactococcus lactis DHODA, a representative of the class 1A enzymes. Based on the DHODA structure we selected seven residues that are highly conserved between both main classes of DHODs as well as three residues representing surface charges close to the active site for site-directed mutagenesis. The availability of both kinetic and structural data on the mutant enzymes allowed us to define the roles individual structural segments play in catalysis. We have also structurally proven the presence of an open active site loop in DHODA and obtained information about the interactions that control movements of loops around the active site. Furthermore, in one mutant structure we observed differences between the two monomers of the dimer, confirming an apparent asymmetry between the two substrate binding sites that was indicated by the kinetic results.
About this StructureAbout this Structure
1JQV is a Single protein structure of sequence from Lactococcus lactis with , , and as ligands. Active as Dihydroorotate oxidase, with EC number 1.3.3.1 Full crystallographic information is available from OCA.
ReferenceReference
Lactococcus lactis dihydroorotate dehydrogenase A mutants reveal important facets of the enzymatic function., Norager S, Arent S, Bjornberg O, Ottosen M, Lo Leggio L, Jensen KF, Larsen S, J Biol Chem. 2003 Aug 1;278(31):28812-22. Epub 2003 May 5. PMID:12732650
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